Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq122 370 4e-98 seq1959 107 7e-19 >seq122 Length=4874392 Score = 370 bits (410), Expect = 4e-98 Identities = 762/1109 (69%), Gaps = 27/1109 (2%) Strand=Plus/Minus Query 19846 ACGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACAC 19905 || |||||||| | |||||||||||||||||||| || || || |||||||||| ||| Sbjct 2976745 ACACTGATCCGCAGGGAGTTTCCTGACAACATCGACCTACTCATTGTCGATGAAGCTCAC 2976686 Query 19906 ATGAAGCGTCGTGCGTTACTTGAGGTTATCCGGGACAAAGATATCAGGGTTCTTGGGCTT 19965 |||||||||||||| || |||||| ||||||| ||| || || | ||| | ||||| Sbjct 2976685 ATGAAGCGTCGTGCCTTGCTTGAGATTATCCGCGACCGCGACATTCGTGTTGTCGGGCTG 2976626 Query 19966 TCCGGCACCCCGTTCGCAGCCTGGATGGGGAAGTACTACGAATGCCTGATCAAGCCTACA 20025 || || || || ||| | | |||||||| |||| ||||| |||| ||||| || || Sbjct 2976625 TCTGGAACGCCTTTCTCGCCGTGGATGGGCCAGTATTACGAGCGCCTCATCAAACCCACC 2976566 Query 20026 ACGATTCGTGAACTTATTCAGC-GTGGTGATCTGAGCGATTATGAGTTTTTTGCCCCCTC 20084 ||||| || || | | ||| |||||| || || || || |||| || || | Sbjct 2976565 ACGATGAAAGAGCTGA-TAAGCATTGGTGACCTTAGTCCCTACGAATTTTACGCGCCGAC 2976507 Query 20085 AATGCCTGATCTGGCTGGCGTAAAAA---CCAGTAACACCGTATTTGGACGGGATTACAA 20141 | ||||| || || ||||||| |||| | | ||||||||| || ||||| Sbjct 2976506 TACACCTGACTTGAAAGGGGTAAAAACTTCCAGCCTGTCGGGATTTGGACGCGACTACAA 2976447 Query 20142 CGAGGAACAGCTCGCATCCATCATGGGGAGTTCGGATCTGGTTGGCGATATCGTCAGCAA 20201 ||| || ||| | || || ||||| | | | | |||| ||||||||||||||||| Sbjct 2976446 CGAAGACCAGTTGGCCGAGATTATGGGTGATGCCGCTTTGGTGGGCGATATCGTCAGCAA 2976387 Query 20202 CTGGCTTGAGAATGGCGAGGATTTACCGACGATCTGCTTCTGCGTGAATGTGGCTCATGC 20261 |||||| |||| |||||||| || || | |||||||| || || | ||||||| Sbjct 2976386 CTGGCTGCAGAACGGCGAGGACCGGCCAACTGTTTGCTTCTGTGTCAACCAGTCTCATGC 2976327 Query 20262 GAACTTTGTTACCCGTGAGTTTTTACAGT-CTGGCATTGGC-GCAGAGGTGATGACGGCA 20319 || | || |||| ||| || || |||| | |||| || ||| | |||| | Sbjct 2976326 CGGGTTCATAACGACTGAG-TTTAACCGTGCTGG-AGTGGCGGCGGAGATCATGATTGAT 2976269 Query 20320 GATACCCCCCATGATGAACGACAGGACATCATTCGCCGTTTTGAAGAGGGTGCGACCAAA 20379 | || || | |||||||| | || |||| || || ||| |||| | || || Sbjct 2976268 GCCACTCCGCCAGATGAACGTCGAATGATTATTCATCGCTTCGAACAGGGCGTAACGAAG 2976209 Query 20380 ATAATTGTCAACGTTGGCGTACTGGTTGCGGGATTTGACAGCGATGTTCGCTGCCTGATC 20439 ||||| || |||||||| || ||| || || |||||||||||||| || ||| | ||| Sbjct 2976208 ATAATCGTTAACGTTGGTGTGCTGACCGCAGGCTTTGACAGCGATGTACGGTGCATCATC 2976149 Query 20440 TACGCCCGTCCGACCAAATCAGAAATCCGCTGGTTGCAGTGCATCGGGAGAGCGTTACGT 20499 || |||||||| || ||||||||||| |||||| | ||| | || | | | || Sbjct 2976148 TATGCCCGTCCAACAAAATCAGAAATGCGCTGGATTCAGGTGTTGGGTCGCGGACTCCGC 2976089 Query 20500 ACTGCGTCTGGTAAAAAACGCGCATTGATTTTCGACCATTCCGGCACGGTTCATCGGCTG 20559 || || | || ||| | | ||||||| || || ||| | | || || ||| Sbjct 2976088 ACGGCACCAGGGAAAGACCATTGTCTGATTTTTGATCACAGCGGTAGCATACACCGCCTG 2976029 Query 20560 GGCTTCCCCGAGGATATCGAGTATGACGAACTTCCG-GGAAAAAATGACGGAATGAAAGC 20618 |||| ||| || || ||||||||||||| |||| | || |||| |||||| |||||| | Sbjct 2976028 GGCTACCCGGATGACATCGAGTATGACG-ACTTGAGCGGCAAAAGTGACGGCATGAAATC 2975970 Query 20619 GTCTGCTGGCGGGAGTGA---GGTTAAGGCTGAGAAACTTCCCAGGGAATGCCCCAAATG 20675 |||| || | || || | ||| ||||| |||| || || | | || Sbjct 2975969 AGCTGCAGGTAGTAGCGAACCTGAGAAGATCGAGAAGAAACCCAAAGAGTGTTCGCAGTG 2975910 Query 20676 CCACTTCATGAAGCCTGCTGGCGTGCATATGTGTCCCAAATGTGGATTTCGTCCTCTTGG 20735 ||| ||||||||||||||||| || || | || || || |||||||| ||| | || Sbjct 2975909 CCATTTCATGAAGCCTGCTGGGGTATATGTATGCCCGAAGTGTGGATTCAAGCCTGTAGG 2975850 Query 20736 TGGTGATGACGTGGCGACAGATCGCGA-TCGTAAGCTTTCACGCGTCAACAAAGGGAAAC 20794 ||| || |||| | || || | | | || || | | ||| || | | || ||||| Sbjct 2975849 TGGAGAGAACGTAGAAACGGA-CACTACCCGCAAAC-TGCAC-CGCCTA-AAGGGGAATG 2975794 Query 20795 GC-GAA--TACACCCGTGAGGAAAAACAGCGTTGGTGGAGCGAGATCAAGGGGTATCAGA 20851 | ||| || | ||| |||| || ||| |||||||| ||||||||||||| ||| Sbjct 2975793 TCAGAACCTATAGCCGCAAGGATAAGCAGTCATGGTGGAGTCAGATCAAGGGGTACCAGC 2975734 Query 20852 ATTACCGC-AAC---GCGACAGGTAAGCCACTGAGTGACGGATGGTGTGCTCATACCTAC 20907 |||||| || | | |||||| | ||| |||||||| |||||||| | | Sbjct 2975733 GCTACCGCGCACTTAGTG-GTGGTAAGAATTTATCTGATGGATGGTGCGCTCATACTTTC 2975675 Query 20908 AAGGAGAAGTTCGGGGTTTGGCCTAAAGG 20936 | ||| |||||||| | ||||| || || Sbjct 2975674 AGGGATAAGTTCGGAGAATGGCCAAATGG 2975646 Score = 149 bits (164), Expect = 2e-31 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 19730 ACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTAT 19789 ||||||| || | || || | | ||||||||||| ||| ||||||| | ||| | Sbjct 2983957 ACCAGACTGCTCAGCGGTTTATACAGTACGGTTTGCCAGAGGAGCAAATCAGCTATGTCT 2983898 Query 19790 GGCGTGATCACC---CTAACTATGACCCGTCACGACTGATTCAGATTGCCAGTGCCGACA 19846 |||| ||| ||| || || || | | ||||| ||||||||||| || |||| Sbjct 2983897 GGCGCGATTACCAGCCTCACGATCA---GAGCCGACTAATTCAGATTGCTTCAGCAGACA 2983841 Query 19847 CGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACACA 19906 | |||||||| | |||||||||||||||||||| || || || |||||||||| |||| Sbjct 2983840 CACTGATCCGCAGGGAGTTTCCTGACAACATCGACCTACTCATTGTCGATGAAGCTCACA 2983781 Query 19907 TGAAGCGTCGTGCGTTACTTGAGGTTATCCGGGA 19940 ||||||||||||| || |||||| ||||||| || Sbjct 2983780 TGAAGCGTCGTGCCTTGCTTGAGATTATCCGCGA 2983747 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 24079 TTATTATCCTGCGCCC--GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCG 24135 |||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||||| Sbjct 217266 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 217207 Query 24136 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 24173 | |||||||||||||| |||||| ||||||||| || Sbjct 217206 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCAGAT 217169 Score = 86.0 bits (94), Expect = 2e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 21636 TGCAGCATGCCAAATCGGTGGCAATACGCCTGTATCCGGTGTCGTCCACTCTGGGGATAG 21695 || || |||| | || || |||||||| || | || || | || || || || || | Sbjct 2974942 TGGAGTATGCGACTTCAGTCGCAATACGTCTTTTCCCTGTTGCATCAACGCTAGGAATCG 2974883 Query 21696 CCGAGGGTATCGAAACTGCGCTTTCATGCCGTCAAATCTTCCGCTGCAATGTGTGGTCAA 21755 | ||||| || ||||||||||||||||| || ||| | | ||| |||||| Sbjct 2974882 CTGAGGGAATTGAAACTGCGCTTTCATGTAAGCAGCTCTATCACGTTAATACCTGGTCAG 2974823 Query 21756 CAATGAACTCCGGTTTTATGGAGAAGTTCATTGCGCCACCTGGCGTTAATCACCTGATTA 21815 || |||||| ||||||| ||| || || |||||| |||| ||||| || ||| ||| Sbjct 2974822 TTATCAACTCCAACTTTATGGCGAAATTTATCGCGCCAGCTGGAGTTAAGCATCTGGTTA 2974763 Query 21816 TCTTTGCTGACAATGATGCGCA 21837 | || | || | ||| |||| Sbjct 2974762 TTTTCACGGATATGGATCCGCA 2974741 >seq1959 Length=43063 Score = 107 bits (118), Expect = 7e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 24094 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 24153 |||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 8111 CGGCCCTTTAGCTCAGCGGTTAGAGCTTGCGACTCATAATCGCCAGGTCACTGGTTCAAA 8170 Query 24154 TCCAGCAAGGGCCACCA 24170 ||||| ||||| ||||| Sbjct 8171 TCCAGTAAGGGTCACCA 8187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193537604932910