Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq122 116 9e-22 seq746 91.5 4e-14 seq1959 82.4 2e-11 >seq122 Length=4874392 Score = 116 bits (128), Expect = 9e-22 Identities = 232/344 (67%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 4174 CCACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTATCC 4233 || || ||||| |||||||| || |||||| || | |||||||| ||| || | || Sbjct 4802363 CCGCCCAGCATCTGCATGGTGCCGCCAACGTTAACCACAACTTCGGTGGTGTACTTCTCA 4802304 Query 4234 TGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGAG 4293 || || || |||||| | ||| ||| | ||||| | |||||||| |||| Sbjct 4802303 ACGCCAGCCTGGTCAGTCCATTTACGGGTCTGCAGTGCGCCTTCGATATAAACCTGAGAG 4802244 Query 4294 CCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGC 4353 ||||| ||||| ||||| | ||| | ||| ||||| || ||| || || ||||||||| Sbjct 4802243 CCTTTACGCAGGTATTCACCGGCCACTTCAGCCAGCTTGCCGAACAGCACAACGCGGTGC 4802184 Query 4354 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 4413 || || || | ||| || || || || ||||| || ||||| ||| || ||||| Sbjct 4802183 CATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGCTTGTCGCGCCAGGATTCGGAGGTAGCC 4802124 Query 4414 ACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCCA 4473 | || | ||| |||| || || || || | | ||| || || ||||| Sbjct 4802123 AGAGTGATGTTGGCAACGGCACCGCCATTCGGCATGTAGCGAACTTCCGGGTCCTGCCCC 4802064 Query 4474 AGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 4517 || || | | || || || |||||||||||||| ||||| Sbjct 4802063 AGATTTCCGACTAAAATTACTTTGTTTACGCCTCTGCTGGCCAT 4802020 >seq746 Length=29260 Score = 91.5 bits (100), Expect = 4e-14 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 4173 GCCACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTATC 4232 |||||| | ||||||||| || ||||| ||| || | || || || ||| | || Sbjct 138 GCCACCCAACATTTGCATAGTGCCACCCACGTTAACCACAACCTCCGTTGTGTAATGCTC 79 Query 4233 CTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGA 4292 | | |||| |||||| ||||| |||| ||| |||| | ||||||| ||||||| || Sbjct 78 CAGCCCGCCTTGATCTTGCCACTTTCGTGTACGCAGCTGGCCTTCAATGTAAACCTGTGA 19 Query 4293 GCCTTTTCGCAGATATTC 4310 |||||| ||||||||||| Sbjct 18 GCCTTTACGCAGATATTC 1 >seq1959 Length=43063 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 17371 ATCGCTGACATGCAGAAGCATCAACGTGATGTAGCAGAACTCGACGCAAGATACACAAAG 17430 ||| | |||||||||| | || || ||||| || | ||||||||||| ||||||||| Sbjct 9631 ATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACAAAG 9690 Query 17431 GAGCTTGCTGATGCTAACGCGACTATCGAAAGCCTCCGTGCTGATGTTTCTGCTGGTCGT 17490 ||| | ||||||||||| || | || ||| ||||| || |||| || ||| || Sbjct 9691 GAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGCCGC 9750 Query 17491 AAGCG 17495 ||||| Sbjct 9751 AAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126736173533648