Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq122 123 8e-24 seq620 98.7 3e-16 >seq122 Length=4874392 Score = 123 bits (136), Expect = 8e-24 Identities = 133/171 (78%), Gaps = 19/171 (11%) Strand=Plus/Plus Query 371 CACGGAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCAC 430 || || ||||||||||||||||| | | |||||| ||||||||||||| |||||||||| Sbjct 1292646 CAAGGGATTTAAAATCCCTCGGCTTATG-GCTGTGTGGGTTCAAGTCCCACCCCGGGCAC 1292704 Query 431 CA---TTGA-------TTTAAAAAGAATTAAAACAAGCACTTATGTGCAATGTCGTAGAC 480 || | || |||||| |||| ||||||||| | | ||||||||||| || Sbjct 1292705 CATCTTCGAACTACCGATTAAAACGAATAAAAACAAGC---TGTAAGCAATGTCGTA-AC 1292760 Query 481 CGCC---GAGAGGCGGtttttttGTGCCTGAAAGTCC-CTTTCCTAATATT 527 |||| || ||||||||||||| ||||||||| ||| |||||| | |||| Sbjct 1292761 CGCCCCTGAAAGGCGGTTTTTTTATGCCTGAAATTCCTCTTTCCCACTATT 1292811 Score = 120 bits (132), Expect = 9e-23 Identities = 144/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 21061 GGCTGCTCGACTACACGTACCGTTTACGTGCCAGCGCAATGCGTACCACTGCCAGCGGAA 21120 ||||||||||||||||| ||| ||||| |||||||||||| || | || || Sbjct 2960890 GGCTGCTCGACTACACGCTTCGTCTACGTTCCAGCGCAATGCACGCCTATCCCGGCCTCG 2960831 Query 21121 CTGACACAGCCAGTGCTGGTGCCGCTGCCACCGGCTGCCGATTGACGTACGCACAGGCTG 21180 ||| ||||| ||||||| |||||||| ||||| || |||||||| ||||| | Sbjct 2960830 TTGATGAAGCCAATGCTGGTACCGCTGCCCCCGGCCCCC---TGACGTACTGTCAGGCGG 2960774 Query 21181 TTTACTGGATTGACCCGCTACTGACGGTAATTGACCAGGCTAATAGCCAACTAGCCGGCA 21240 | ||||||||||| | || |||| ||||||||||| || |||||||| || |||| Sbjct 2960773 TACTGTGGATTGACCCATTGCTAACGGCGATTGACCAGGCCAACAGCCAACTGGCTGGCA 2960714 Query 21241 TACGCGAAGCTGAAC 21255 | || || ||||| Sbjct 2960713 TCCGAGACATTGAAC 2960699 >seq620 Length=44282 Score = 98.7 bits (108), Expect = 3e-16 Identities = 111/149 (74%), Gaps = 10/149 (7%) Strand=Plus/Plus Query 7941 TATGAGCATGAACTTAATGGCGAAAGCCATGAGCCGAAAAGTCGGTAACCCACTACGTAA 8000 |||||||||| | ||||||| || ||||||| ||||| || ||||| || || || Sbjct 6817 TATGAGCATGGAATTAATGGTCAAGGCCATGAAAACCAAAGTGGGAAACCCGCTTCGGAA 6876 Query 8001 GCTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAAGGTGAATGCTGGCCG----- 8055 |||| ||| | |||||||| ||||| || | ||||||||| |||||||||||| Sbjct 6877 ATTGGTTCTCCTGAAGCTGGCAGATAATGCCAGTGACAAAGGCGAATGCTGGCCGAGCCT 6936 Query 8056 TCATACCAGCATGTCGCTGATCAGTGTGA 8084 || || || |||| ||||||||||| Sbjct 6937 TCGTAACA-----TCGCCGATCAGTGTGA 6960 Score = 84.2 bits (92), Expect = 7e-12 Identities = 116/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 21054 GCTGATCGGCTGCTCGACTACACGTACCGTTTACGTGCCAGCGCAATGCGTACCACTGCC 21113 |||| ||| ||||| |||||||| | || |||| ||||||||||||| || | || Sbjct 14675 GCTGGCCGGTTGCTCAACTACACGAATAGTCTACGAGCCAGCGCAATGCACGCCTATCCC 14734 Query 21114 AGCGGAACTGACACAGCCAGTGCTGGTGCCGCTGCCACCGGCTGCCGATTGACGTACGCA 21173 || ||| ||||| ||||||| || ||||| ||||| || |||||||| Sbjct 14735 GGCCTCGTTGATGAAGCCAATGCTGGTACCACTGCCCCCGGCACCC---TGACGTACTGT 14791 Query 21174 CAGGCTGTTTACTGGATTGACCCGCTACTGACGGTAATTGAC 21215 ||||| || |||||||| | ||||||||| || || ||| Sbjct 14792 CAGGCGGTGCTGTGGATTGATCAGCTACTGACAGTCATCGAC 14833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154919677282496