Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq122 174 1e-38 seq109 87.8 1e-12 >seq122 Length=4874392 Score = 174 bits (192), Expect = 1e-38 Identities = 228/313 (73%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 28562 GGAGTAACTGACAAAGGTTACTTAACAAACTCATTCCACTTAGACGTACTGAAGAAGGTA 28621 || || || ||||||||||||| || ||| |||||| | ||||| ||| ||||| Sbjct 3821281 GGCGTCACCGACAAAGGTTACTACACCAACAGCTTCCACCTCGACGTTGAGAAAAAGGTT 3821340 Query 28622 AACCCGTATGATAAAATCGACTTTGAAGCGCAAT-TCATCCCATACAGCTCCGGTGGTCA 28680 || ||||| || |||||||||||||||||| | || || || | | ||| ||| Sbjct 3821341 AATCCGTACGACAAAATCGACTTTGAAGCGGGCTATCCGCCGAT-CGCCAACGGCGGTTT 3821399 Query 28681 TATCTGCTACGGGGAATTCCCTAATATGCGCCACAATATTGAAGCACTCGAAAATGTGTG 28740 |||||||||||| || | ||| ||||| | || || | | ||||| || | || || Sbjct 3821400 TATCTGCTACGGCGAGTACCCGAATATCCAGCATAACCTGAAGGCACTGGAGGACGTCTG 3821459 Query 28741 GGATTACGCCTACACCAAAGTCCCATACTACGGCACCAACACACCAATTGATGAATGCTA 28800 ||||||| ||||| | || || || |||||||||||||| || |||||||||||||| Sbjct 3821460 GGATTACAGCTACAGCCGCGTGCCCTATTACGGCACCAACACCCCGATTGATGAATGCTA 3821519 Query 28801 TAGCTGCGGATTCAAAGGTGAGTTCAATTGTACAAGCAAAGGTTTTGAGTGTCCTAACTG 28860 ||||| || | ||||||||| || || |||||||| || || || ||||| Sbjct 3821520 CGAGTGCGGCTTTACGGGTGAGTTCGCCTGCACCAGCAAAGGCTTCACCTGCCCGAACTG 3821579 Query 28861 CGGAAACCACGAC 28873 ||| || |||||| Sbjct 3821580 CGGCAATCACGAC 3821592 >seq109 Length=705085 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 45236 GCGCCCTTAGCTCAGCTGGATAGAGCACGTCCCTTCTAAGGATGTGGTCGTAGGTTCGAA 45295 ||||||||||||||| |||||||||||| ||||||||| |||| |||||||||| Sbjct 321746 GCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCATAGGTTCGAA 321805 Query 45296 TCCTACAGGGCGTGCCAT 45313 ||||| ||||||| |||| Sbjct 321806 TCCTATAGGGCGTACCAT 321823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356667173404981