Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019530.1 Length=157785 Score E Sequences producing significant alignments: (Bits) Value seq83 89.7 5e-13 seq122 86.0 6e-12 >seq83 Length=912621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 137811 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137870 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 426535 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 426594 Query 137871 CATCGTCGCCAAATTGAAGTAG 137892 || | |||||||| ||| || Sbjct 426595 CAGAGGAGCCAAATTTAAGAAG 426616 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 137811 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137870 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 400915 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 400974 Query 137871 CATCGTCGCCAAATTGAAGTAG 137892 || | |||| ||| ||| || Sbjct 400975 CAGAGGAGCCATATTTAAGAAG 400996 >seq122 Length=4874392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 137811 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137870 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 1434231 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 1434172 Query 137871 CATCGTCGCCAAATTGAAGTAG 137892 || | |||| ||| ||| || Sbjct 1434171 CAGAGGAGCCATATTTAAGAAG 1434150 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 137811 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137870 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 2497401 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 2497460 Query 137871 CATCGTCGCCAAATT 137885 || | |||||||| Sbjct 2497461 CAGAGGAGCCAAATT 2497475 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 137811 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137870 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 2544460 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 2544519 Query 137871 CATCGTCGCCAAATT 137885 || | |||| ||| Sbjct 2544520 CAGAGGAGCCATATT 2544534 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 137811 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137870 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 2590692 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 2590751 Query 137871 CATCGTCGCCAAATT 137885 || | |||| ||| Sbjct 2590752 CAGAGGAGCCATATT 2590766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504744481722600