Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq122 136 6e-27 seq83 131 2e-25 seq1959 84.2 3e-11 seq380 84.2 3e-11 >seq122 Length=4874392 Score = 136 bits (150), Expect = 6e-27 Identities = 246/360 (68%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 119939 GTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGT 119998 ||| ||||||| || ||||| | || || |||| ||||||||| ||||| ||| || Sbjct 2806224 GTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGT 2806165 Query 119999 AGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTT 120058 || | ||||| || | | || || || ||| ||| ||||| || ||||||||||| Sbjct 2806164 CGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTT 2806105 Query 120059 GTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGC 120118 ||||| || || |||||| ||| |||||| ||| ||| || || ||| ||| Sbjct 2806104 ATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGC 2806045 Query 120119 ACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATATAACTAATAATAGA 120178 ||| || ||| || ||||| || ||||| ||||| ||| | || | | ||| | Sbjct 2806044 ACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGC 2805985 Query 120179 TGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACGAACT 120238 || || ||||||| || | || |||||| | ||||| || || || || Sbjct 2805984 GCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCT 2805925 Query 120239 AAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTGGGATTGAAATCTTAAA 120298 || |||||||| |||||||| | || || ||| || || || | ||||||||||| Sbjct 2805924 GAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAA 2805865 Score = 109 bits (120), Expect = 8e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994 |||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||| || Sbjct 217248 GGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTCAAG 217189 Query 198995 TCCAGTAGGGGCCACCAGAT 199014 ||||| ||||||||||||| Sbjct 217188 TCCAGCTGGGGCCACCAGAT 217169 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 198612 TGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCGA 198671 ||||| ||||||||||||||||||||| || ||||||| ||| |||||| ||||||| Sbjct 814339 TGCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGA 814398 Query 198672 ATCCAGTACGGCGCACCA 198689 |||| ||| |||| |||| Sbjct 814399 ATCCTGTAGGGCGTACCA 814416 Score = 87.8 bits (96), Expect = 3e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 199774 GAACTTTTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACA 199832 ||| | ||||| || |||||||| |||||||||| ||||||||||||||| ||||| | Sbjct 4619264 GAAGTATTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGA 4619323 Query 199833 GGTTCGAGTCCTGTATCACCGACCACTT 199860 ||||||| |||| | || ||||||| || Sbjct 4619324 GGTTCGAATCCTCTCTCGCCGACCAATT 4619351 Score = 86.0 bits (94), Expect = 9e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 199780 TTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCG 199838 ||||| || |||||||| |||||||||| ||||||||||||||| ||||| ||||||| Sbjct 4619104 TTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCG 4619163 Query 199839 AGTCCTGTATCACCGACCACTT 199860 | |||| | || ||||||| || Sbjct 4619164 AATCCTCTCTCGCCGACCAATT 4619185 >seq83 Length=912621 Score = 131 bits (144), Expect = 2e-25 Identities = 285/422 (68%), Gaps = 6/422 (1%) Strand=Plus/Minus Query 119880 AGCTTATTGATATGCACACTGTAATCAAGACCCCGGATCCGGGTTTCATCAGTACCCTTG 119939 || || ||||| || || | |||||| || |||| ||| | | ||| ||| | Sbjct 580185 AGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGG 580126 Query 119940 TTATTCTTCAATAC-AAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGT 119998 ||||| |||| || || || || |||| ||||| ||||||||||||||| ||| || Sbjct 580125 TTATTTTTCAGGACTAATAAGCTT-TCAATTTCCAAGTGCCACATAGGGTAAAACAGTGT 580067 Query 119999 AGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTT 120058 || | || || |||| | |||||||| || || || || || |||||||| || Sbjct 580066 CGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTT 580007 Query 120059 GTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGC 120118 |||||| ||||| ||||||||| ||||| || || ||||| || ||| Sbjct 580006 GTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGC 579947 Query 120119 ACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATA--TAACTAATAATA 120176 ||||||| |||||||| ||||| || || || ||||| ||| | || ||| ||| Sbjct 579946 ACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTG--TGAAACGTATTTAACGATA 579889 Query 120177 GATGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACGAA 120236 | ||| || |||| ||||| | | |||||| | || || ||| || || Sbjct 579888 GCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAG 579829 Query 120237 CTAAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTGGGATTGAAATCTTA 120296 || |||||||| || || || || | ||| ||| || || || || | ||||| ||| Sbjct 579828 CTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTA 579769 Query 120297 AA 120298 || Sbjct 579768 AA 579767 Score = 105 bits (116), Expect = 1e-17 Identities = 144/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 117804 GCGATTTCTACCATCTCTGGGTCGTCTTTACCGCTTTGCCAGC-GATGAAGGATAGTCTG 117862 || || ||| ||| || || || |||| ||||||| || ||| ||| || ||| ||| Sbjct 582381 GCAATCTCTTTCATTTCCGGATCATCTTCACCGCTTCGC-AGCAGATTTAGCATATGCTG 582323 Query 117863 GGTTGCCTTAAGGTGTACTGCTTCGTCACGGGCGATTAGACGCATGATCTTAGCACTACC 117922 ||| || | ||||| | |||||||| || ||||| ||||| |||||||| ||| |||| Sbjct 582322 TGTTCCCGTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATGATCTTGGCATTACC 582263 Query 117923 TTCCATCATCCCAGTGAATTCTGGGAAAGAGAAGTTACAGACAAAACTAACATAGAACCG 117982 |||||||| | || || | ||| | ||| ||| |||| || || ||||| || Sbjct 582262 TTCCATCAGCTCA---CGCTCGGCGAACGCGAATGAACAAGCAAAGCTCACGTAGAAACG 582206 Query 117983 AATGGCTTCAAGTGCGTT 118000 ||||||||| || || || Sbjct 582205 AATGGCTTCGAGGGCATT 582188 >seq1959 Length=43063 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 198924 ACATATCATTTGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTC 198983 ||| || ||| ||||| ||||||||| ||||||||| ||||||||||||| |||| Sbjct 8101 ACACATTATTCGGCCCTTTAGCTCAGC-GGTTAGAGCTTGCGACTCATAATCGCCAGGTC 8159 Query 198984 ACTGGTTCGAGTCCAGTAGGGGCCACCA 199011 |||||||| | ||||||| ||| ||||| Sbjct 8160 ACTGGTTCAAATCCAGTAAGGGTCACCA 8187 >seq380 Length=239961 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 109789 TCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCGA 109848 Query 199840 GTCCTGTATCACCGACCA 199857 |||| | || ||||||| Sbjct 109849 ATCCTCTCTCGCCGACCA 109866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741391553764440