Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019540.1 Length=49390 Score E Sequences producing significant alignments: (Bits) Value seq122 91.5 5e-14 seq109 80.6 8e-11 >seq122 Length=4874392 Score = 91.5 bits (100), Expect = 5e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 44194 GCCCCGTTAGTTCAATTGGATAGAGCAACGGCCTTCTAAGCCGTGAGTTACAGGTTCGAA 44253 || || |||| ||| |||||||||||| |||||||||||||||| || ||||||||||| Sbjct 814340 GCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAA 814399 Query 44254 TCCTGTACGGGGTGCCAA 44271 ||||||| || || |||| Sbjct 814400 TCCTGTAGGGCGTACCAA 814417 >seq109 Length=705085 Score = 80.6 bits (88), Expect = 8e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 44194 GCCCCGTTAGTTCAATTGGATAGAGCAACGGCCTTCTAAGCCGTGAGTTACAGGTTCGAA 44253 || || |||| ||| |||||||||||| |||||||||||||||| || | ||||||||| Sbjct 321746 GCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCATAGGTTCGAA 321805 Query 44254 TCCTGTACGGGGTGCCA 44270 |||| || || || ||| Sbjct 321806 TCCTATAGGGCGTACCA 321822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157914654520112