Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019543.1 Length=160646 Score E Sequences producing significant alignments: (Bits) Value seq109 91.5 2e-13 seq122 84.2 2e-11 >seq109 Length=705085 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60942 CCCTATTGGATTCGAACCAATGACCCGCGGCTTAGAAGGCCGCTGCTCTATCCGACTGAG 61001 |||||| ||||||||||| |||||| ||||||||||||||| |||||||||| |||||| Sbjct 321815 CCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGGTGCTCTATCCAACTGAG 321756 Query 61002 CTAAG 61006 ||||| Sbjct 321755 CTAAG 321751 >seq122 Length=4874392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 60930 AATT-TTGGCAGTCCCTATTGGATTCGAACCAATGACCCGCGGCTTAGAAGGCCGCTGCT 60988 |||| |||| | ||||| ||||||||||| ||||| ||||||||||||||| |||| Sbjct 814422 AATTATTGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCT 814363 Query 60989 CTATCCGACTGAGCTAAG 61006 |||||| ||||||||||| Sbjct 814362 CTATCCAACTGAGCTAAG 814345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513898964984880