Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq122 282 1e-71 >seq122 Length=4874392 Score = 282 bits (312), Expect = 1e-71 Identities = 549/801 (69%), Gaps = 20/801 (2%) Strand=Plus/Minus Query 45430 GAAAACTATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAA 45489 ||||| |||||||| ||||| | || |||| || | | || | ||| | || Sbjct 3442847 GAAAA--ATGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGCAGGGCACGCCCAA 3442790 Query 45490 AGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTT 45549 | | || || || ||||| ||||| ||||| | || || | |||| |||| || || | Sbjct 3442789 AAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAATCT 3442730 Query 45550 GCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGA 45609 ||||||||| || ||||| || || || || |||| ||| | ||||| |||||| |||| Sbjct 3442729 GCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCATGA 3442670 Query 45610 ACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGAC 45669 ||||| ||||| | || || || || || | ||| || |||| ||| ||| | Sbjct 3442669 GCTGCTGTGGTTCCTTAACGGTGACACCAACATCGCCTACCTGAAGGAAAATAAGGTGTC 3442610 Query 45670 GATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATG 45729 ||| ||||||||||||||||||||||| || || ||||| || | || ||| || || Sbjct 3442609 GATCTGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAACAGTG 3442550 Query 45730 GCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATT-GC--GGCGGTCTTTAA 45786 ||| ||| | || || ||| | ||||||| | || || |||| | Sbjct 3442549 GCGCAGCTGGGGGGCAGCGGATGGGCGCCAGATCGACCAGCTGAGCAAGGTGGTCGAACA 3442490 Query 45787 G--GAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGT-GGC 45843 | |||| |||| ||||| ||||||| || | | || || |||||||| ||| Sbjct 3442489 GCTGAAA---AGCG--ACCCGGACTCGCGCCGCATCATCGTTTCTGCATGGAACGTCGGC 3442435 Query 45844 AAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGC---CTTTCAGTTTTACGTCGC 45900 || | || || ||| | || |||| || || ||| ||| ||||| ||||| || Sbjct 3442434 GAACT-GGATGAGATGGCGCTGGCCCCGTGCCA---CGCGTTCTTCCAGTTCTACGTTGC 3442379 Query 45901 GAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCC 45960 | | ||| | | || ||| | | ||||| || ||||| || || || |||| Sbjct 3442378 GGACGGCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCC 3442319 Query 45961 GTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGA 46020 ||| || ||||| ||||| || || || |||||| | ||||| || |||||||| || Sbjct 3442318 GTTCAATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGA 3442259 Query 46021 TGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACA 46080 || || || | | | ||||| ||||| |||| |||||| || || ||||| || Sbjct 3442258 AGTGGGTGATTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCA 3442199 Query 46081 AGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAA 46140 || ||||||||||||||||| |||||| | ||||||||||| | ||||| || || Sbjct 3442198 GACGCGCCTGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAA 3442139 Query 46141 GCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCA 46200 |||| ||||||||| |||||| | || || || || | | || || |||||||| Sbjct 3442138 GCCGGAGTCTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGCA 3442079 Query 46201 CCCGGCGATTAAGGCTCCTGT 46221 ||||| ||||| || || || Sbjct 3442078 TCCGGCCATTAAAGCCCCGGT 3442058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157738667609782