Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq122 145 2e-30 seq620 114 4e-21 >seq122 Length=4874392 Score = 145 bits (160), Expect = 2e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42583 ACCTGTGATCTGCCTGTTCCTGCTGACATTGCTGGTGGGCTGCTCGAATACGCGTACCGT 42642 ||||||| ||| |||||||||||| || ||||| |||||||||| ||| || ||| Sbjct 2960927 ACCTGTGCTCTCGCTGTTCCTGCTGCTATCGCTGGCAGGCTGCTCGACTACACGCTTCGT 2960868 Query 42643 TTACGTTCCAGCGCAATGCACGCCGATACCGACGGACCTGACGCAGCCGATGATAGTACC 42702 ||||||||||||||||||||||| || ||| | ||| | |||| ||| | ||||| Sbjct 2960867 CTACGTTCCAGCGCAATGCACGCCTATCCCGGCCTCGTTGATGAAGCCAATGCTGGTACC 2960808 Query 42703 GCTGCCGCCGGCTCAATAACGTACTGCCAGGCTGTGCTCTGGATTAAGCCGCTGCTGGCC 42762 |||||| ||||| | | |||||||| ||||| || || |||||| | || |||| | Sbjct 2960807 GCTGCCCCCGGCCCCCTGACGTACTGTCAGGCGGTACTGTGGATTGACCCATTGCTAACG 2960748 Query 42763 GTGATTGAAAAGGGCAATAACAATTTCGCTGGAATTCG 42800 | |||||| ||| ||| | | | | ||||| || || Sbjct 2960747 GCGATTGACCAGGCCAACAGCCAACTGGCTGGCATCCG 2960710 Score = 109 bits (120), Expect = 2e-19 Identities = 166/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 21645 CCAACCACATATCGGACTCTTCAAACATTTCCTCCAGCAT-GCGGTTCAGTTTTTCCCGA 21703 ||| ||||||||| | |||||||||||| ||||| | || || | ||| ||| || | Sbjct 2920107 CCAGCCACATATCAGCCTCTTCAAACATCTCCTCAATCACAGCAGC-CAGCTTTGCCTTA 2920049 Query 21704 TCGCTTTTGCTGGCATCGCTGTTTAAGCCG---TTCGCCTGCATCGGCTTAACCTTCACT 21760 |||| ||| ||||||||| | || | || | || | |||||||||||||||||| Sbjct 2920048 TCGCCTTTACTGGCATCGGTATTAATGCTGCTGTTAGTGACCATCGGCTTAACCTTCACC 2919989 Query 21761 TCTGCATCCGGAAAGATCCGGTGCACTCGCTTTGTTAACTCATTCAGAATTATTTCTCTG 21820 || ||| ||||||| | ||||| |||||||| | ||| ||| || | || ||| Sbjct 2919988 TCAGCAGCCGGAAACACACGGTGTACTCGCTTCTCCAGTTCAGCCAGGATCAGCTCCCTG 2919929 Query 21821 GCACCTGTTAATCCTTCAACATTCCGTTTGTCGTACACCAACTCAACGAACAT 21873 || | ||| | | ||||| || |||||||| | | ||||||||||| Sbjct 2919928 GCGTTCGGGAATTCGGCCACATTGCGCTTGTCGTAAATGAGTTCAACGAACAT 2919876 Score = 100 bits (110), Expect = 8e-17 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22258 CGCACACGGGCGATGCGCGGGTAGATATGATTAATGCTGTTATTGTGTTGCTCGGCGCTG 22317 || || ||||| ||||||||| | || | | |||| | ||| ||||| || | Sbjct 1592555 CGAACGCGGGCAATGCGCGGGAAAATCCACTCGAAGCTGGCCTGGTGCTGCTCTGCCGTC 1592614 Query 22318 GCGGCACTACAGGCGTCTTCGGCAATCACCAGATTAAAGCCAAGTTCCCAGGCATTGCGG 22377 || | || ||| ||||| ||||||||||| || ||||| || |||||||| || || Sbjct 1592615 GCCGTGCTGCAGATATCTTCCGCAATCACCAGGTTGAAGCCCAGCTCCCAGGCGTTACGC 1592674 Query 22378 GCGGTGGATTCAACACCGATATTGGTCGAGATCCCACATAACACAATTGTATCGATACCT 22437 ||||| ||||||||||| || ||||| | || || | | ||||| || ||||| || Sbjct 1592675 GCGGTAGATTCAACACCAATGTTGGTGGCAATGCCGCCCAGAACAATCGTGTCGATGCCG 1592734 Query 22438 CGGCGGCG 22445 ||||| || Sbjct 1592735 CGGCGACG 1592742 Score = 87.8 bits (96), Expect = 5e-13 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 21638 TCTGAAACCAACCACATATCGGACTCTTCAAACATTTCCTCCAGCATGCGGTTCAGTTTT 21697 || || |||| |||| ||||| || |||||||| || || | ||||| ||| | Sbjct 2402394 TCAGACACCATCCACTGATCGGCTTCCTCAAACATCTCTTCAATAATGCGTAACAGCGTG 2402335 Query 21698 TCCCGATCGCTTTTGCTGGCATCGCTGTTTAAGCCGTTCGCCTGCATCGGCTTAACCTTC 21757 | ||||||||| ||||| || || || | |||||| ||||||||||| || ||||| Sbjct 2402334 GACTTATCGCTTTTACTGGCGTCACTTTTCACGCCGTTGGCCTGCATCGGTTTTACCTTG 2402275 Query 21758 ACTTCTGCATCCGGAAAGATCCGGTGCACTCGCTTT 21793 || ||||| ||||| | || ||||| |||||| Sbjct 2402274 ACCAGCGCATCGGGAAACACACGCTGCACGCGCTTT 2402239 >seq620 Length=44282 Score = 114 bits (126), Expect = 4e-21 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42583 ACCTGTGATCTGCCTGTTCCTGCTGACATTGCTGGTGGGCTGCTCGAATACGCGTACCGT 42642 ||||||| ||| |||| ||| ||| || ||||| || ||||| | ||| || | || Sbjct 14645 ACCTGTGCTCTCGCTGTGCCTACTGCTATCGCTGGCCGGTTGCTCAACTACACGAATAGT 14704 Query 42643 TTACGTTCCAGCGCAATGCACGCCGATACCGACGGACCTGACGCAGCCGATGATAGTACC 42702 |||| ||||||||||||||||| || ||| | ||| | |||| ||| | ||||| Sbjct 14705 CTACGAGCCAGCGCAATGCACGCCTATCCCGGCCTCGTTGATGAAGCCAATGCTGGTACC 14764 Query 42703 GCTGCCGCCGGCTCAATAACGTACTGCCAGGCTGTGCTCTGGATTAAGCCGCTGCTGGCC 42762 ||||| ||||| | | |||||||| ||||| ||||| |||||| | | ||| ||| | Sbjct 14765 ACTGCCCCCGGCACCCTGACGTACTGTCAGGCGGTGCTGTGGATTGATCAGCTACTGACA 14824 Query 42763 GTGATTGA 42770 || || || Sbjct 14825 GTCATCGA 14832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141867848060022