Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq122 881 0.0 seq1959 82.4 2e-11 >seq122 Length=4874392 Score = 881 bits (976), Expect = 0.0 Identities = 1575/2285 (69%), Gaps = 60/2285 (3%) Strand=Plus/Minus Query 6900 TATCCCTATGTGGTCTGGCAGAACATCACCGGTTCTCCAGAGAACTACATTGCCCAGCGC 6959 |||||||||| ||| ||||||||||| || || |||||||| ||| ||| |||| Sbjct 2935640 TATCCCTATGCGGTGTGGCAGAACATAACAGGCGGACCAGAGAATTACCTTGGAACGCGC 2935581 Query 6960 CCTGACGCAGACTTTTTCACGCTGCAGGTGGATGCATATGCCGACACCGTGGATGAAGTG 7019 |||||||| ||| | ||| || ||||| ||| |||||| |||||| ||||||| Sbjct 2935580 CCTGACGCGGACAGCTACACCCTTCAGGTTGATATCTATGCCAACACCGACAGTGAAGTG 2935521 Query 7020 ATTGCCGTGGCTACTGCGCTGCGGGATGCCATTGAGCCGCACGCGCATATCACGCGCTGG 7079 || |||||||| |||||||| ||||||||||| || | ||| ||||||| || ||| Sbjct 2935520 ATCGCCGTGGCGCGCGCGCTGCGTGATGCCATTGAACCCCGCGCCTATATCACCCGATGG 2935461 Query 7080 GGCGGACAGGAAAGAGACCCCGAAACAAAGCGCTATCGCTACTCATTCGATGTTGACTGG 7139 |||| ||||| ||| ||||| || || || ||||| ||||||||||| |||||| Sbjct 2935460 GGCGAGCAGGAGCAGGACAGTGAAACGAAACGGTACCGCTATTCATTCGATGTCGACTGG 2935401 Query 7140 ATAGTCACTCGATAAACGTA-----TTATTCAACC-ACCGGCCTTGAGCCGGtttttttA 7193 ||||| |||||| || | ||| |||| ||| || | | ||| ||||||| Sbjct 2935400 ATAGTGTTGCGATAA-CGAAAACCCTTAA-CAACAGACCCGC--TCCGGCGGGTTTTTTA 2935345 Query 7194 TGACC-GGAGATAACAATGTCTGTATTGACGCAAGGTACGCAGCTCTTTGTGCTCGTAAA 7252 | ||| ||||| ||| ||||| || |||| |||||||| ||||||| ||| |||| Sbjct 2935344 TTACCTGGAGAAAACTATGTCAGTCGTGACACAAGGTACTCAGCTCTATGTTCTCGCCGC 2935285 Query 7253 AGGCAAGGTGAGCGAAGTTGAATGTATCACTGCATTTTCACCCGGCAGCAATCCGGCTGA 7312 |||| ||| || || || ||||| || || || || ||||| ||| | || || || || Sbjct 2935284 AGGCGTGGTCAGAGAGGTCGAATGCATTACCGCGTTCTCACCGGGCGGGAACCCCGCCGA 2935225 Query 7313 CCAGATTGAAGACACCTGTCTTTCTGAGCGCTTTGATCGCAGCTATAAGCGTGGTCTTCG 7372 |||||||| |||||||| || |||||| |||| || ||| || ||||| Sbjct 2935224 TCAGATTGAGGACACCTGCCTGAGTGAGCGAAACACGCGCACTTACAAGAAGGGACTTCG 2935165 Query 7373 AACGCCTGGCACAG-CATCACTGACGCTTAACGCTGATCCTAAAAATACCAGCCACATCA 7431 || || ||||||| | ||| ||||| || |||||||| ||| | |||||| | | Sbjct 2935164 CACTCC-GGCACAGGCTTCAGCAACGCTCAATGCTGATCCAGCCAATGCAAGCCACCTGA 2935106 Query 7432 TGCTCTACAACCTGTCCATTTCGGACGACGAAAAGGATCAGGACCTGACCTTCGCGATTG 7491 || | ||||||| | || ||| | |||| || ||||||| || ||| Sbjct 2935105 TGTTAAGCAACCTGGCGGAGTCTTCCGATCA---GGAT---GATTTGACCTTTGCTGTTG 2935052 Query 7492 GATGGTCAGACGGAACCGCATCGCCAACTGCGGCTGAAAATGGTGCATCCGGTGCAGTCG 7551 | |||||||| ||| | ||||| | || | ||| ||| | || ||||| | Sbjct 2935051 GCTGGTCAGATGGAGAAGACGACCCAACCGTGGGCGCTGCTGGCGCACCTGGCGCAGTTG 2934992 Query 7552 ATGGCCTGGTGCTACCTGATAGCCGCACATGGTTCGTATTCAAAGGCTATGTGTCCGACT 7611 ||||||| | || || |||| ||||| |||| || ||||||||||| || | |||| Sbjct 2934991 ATGGCCTTATTCTGCCGGATACGCGCACCTGGTATGTCTTCAAAGGCTACGTTGCTGACT 2934932 Query 7612 TCCCGTTTGATTTTGCAGCAAACACGGTTGTTTCTACTTCTGCATCTATCCAGCGCTCCG 7671 |||||||||| || || ||||||||||| || | || | || |||||||| | Sbjct 2934931 TCCCGTTTGACTTCCAGGCCAACACGGTTGTGCAGACGACCGCCACCATTCAGCGCTCAG 2934872 Query 7672 GCTCTGCTGTATGGGTGCCAAAAG-TCGTGACCCCA--TAAA-----ATCAGG-GCGGCA 7722 || ||| | ||| | ||||| | | | | || |||| ||| || | | || Sbjct 2934871 GCGCTGGCGCGTGGATTCCAAAGGCTGGCGCAGGCAGCTAAACAACAATCGGGCGTGACA 2934812 Query 7723 ----ACGCC----CTTATTAATCAGGATTAATAATGAAATTAACACTTGATGCACTCAAG 7774 ||||| ||||| ||||| |||||| | ||||| ||| |||| || Sbjct 2934811 TGTCACGCCTAATCTTATATCGCAGGAAAGCACATGAAACTGACACTCGATTCACTAAAA 2934752 Query 7775 GAGTCCGGCGCGTTTACCGGTCGCCCGGTTGAGAAAGAAATCACCTGGACGCAAGGCGAT 7834 | |||||||| || || ||||| || || || ||| |||||||||||| ||| | ||| Sbjct 2934751 AAATCCGGCGCATTCACAGGTCGTCCTGTGGAAAAACAAATCACCTGGAAGCAGCGTGAT 2934692 Query 7835 aaaaaaaTCACCGCGACCGTGTATGTTCGCCCGATGGGTTATCACACAGCAACGTCCGAT 7894 || || | || || || |||| | || ||| ||||||| |||| || || || || Sbjct 2934691 GAAGAATTAACAGCCACGGTGTTCATCCGACCGTTGGGTTACCACAGCGCCACATCTGAC 2934632 Query 7895 GTGCTGGCTTTTGGTGGTAAGGTCGATGGTGTGGCAGGGCGTATCGCCGCATCCATCTGC 7954 || ||||| || || ||||| || || | || ||||||||||| || |||||| Sbjct 2934631 GTACTGGCCCATGTGGGCAAGGTTGACGGCATTGCCGGGCGTATCGCAGCCAGCATCTGT 2934572 Query 7955 GATGAACATGGTAAACCCATCTTCACCCCGGCTGACATTACTGGTGAGGCAGATCCTGAA 8014 |||||| |||| | || ||||||| || || |||||||| ||||| || || || Sbjct 2934571 GATGAAGATGGCCACCCGGTCTTCACGCCTCAGGATATTACTGGCGAGGCTGACCCCGAT 2934512 Query 8015 CGTGGTGCACTGGATGGCGGCCTGACGGTAGCACTGCTTCTGGCCATTCAGGAAGTTAAC 8074 || || || || ||||||| ||||| | || || || | ||||||||||| || ||| Sbjct 2934511 CGCGGCGCGCTTGATGGCGCACTGACTATCGCGCTCCTGGTTGCCATTCAGGAGGTGAAC 2934452 Query 8075 GATCTGGGAAAGACTTCGAGCTCAGCGCCGAAGACGAATTCTGGTGCGAGCTCGTCCTCA 8134 |||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||| Sbjct 2934451 GATCTGGGAAAGACCACCAACTCAGCGCCGAAGACGAATTCTGGTGTGAGCTCGTCCTCA 2934392 Query 8135 ACGGAATCGGAGGCAGAACAATCGCCGAAGCGCGGGAAGTCCTCTCATTCAAAGAGTCCC 8194 |||||||||| || ||||| ||||||||||| | ||| |||| ||| |||| || Sbjct 2934391 ACGGAATCGGCGGAAGAACCATCGCCGAAGCCAGAGAAAACCTCAGCTTCCGGGAGTACC 2934332 Query 8195 AACTCTGGGCAAAGTACCGGGAACGATACGGGAGTCTGAACCCTATGTTGCGGGTTGAGT 8254 | ||||||| |||||||| | ||||| | |||||||| ||| |||| ||||| Sbjct 2934331 AGCTCTGGGTTAAGTACCGAGCCGCCTACGGCAATCTGAACCAGATGATGCGTACTGAGT 2934272 Query 8255 GGGGTGCCGGGCTGGTGAGCAGCATGATAGCCAACGTTAACAGAGACCCCAAGCGCCCAC 8314 |||| || | ||| | ||||| | | |||||||| ||| | | || || ||||| Sbjct 2934271 GGGGGGCGGCGCTCATAGCCAGCACGCTGGCCAACGTCAACCGGGGCCAGAATGACCCAC 2934212 Query 8315 CATTCAACCCGACCGATTTCACACTTCACTTTACCAAAGTCAAAGCTGCTG-ATGGACCA 8373 | | ||| ||| | ||||| | |||| | || ||| | ||| | | Sbjct 2934211 CTTACAA-------AATTACTGACTTCGC---ACCACA--CA----TGCAGAATGAAGCC 2934168 Query 8374 ATCTCGTTAGAGGAAGCCAGAGC-CAGCTGGAC--ATAATGCCGCCAACGGAGAGTTTAT 8430 || | || || |||| || ||| | || |||| || ||||| || Sbjct 2934167 ATAAGCCTTGAAGATGCCATGGCTCAGTGGAACTGATAAAAACG----TGGAGACACAAT 2934112 Query 8431 GGCTTCCAAATCACTGGGCACGCTGACGATCGACCTGATTGCCAAAGTGGGCGGTTTTGT 8490 ||| ||||| || ||||| |||||| ||||||| |||| ||||| ||||||||||| Sbjct 2934111 GGCCAGTAAATCTCTTGGCACACTGACGCTCGACCTTGTTGCAAAAGTTGGCGGTTTTGT 2934052 Query 8491 CTCAGGCCTCTCGCAGGCTGAGCGAGCTTCACAAAAATGGCGTAAGCAGGTAAAGGAGGA 8550 ||| ||| | |||| || |||| ||| |||||| |||||||||| ||||||| Sbjct 2934051 CTCCGGCATGGACAAGGCGGAAAGAGCATCAGCGAAATGGGGTAAGCAGGTTCAGGAGGA 2933992 Query 8551 TGCCNNNNNNNNNNNNNNNNNCATGACCGGATTCGCAACAGCAGTCGGGGCTGCAGCCAT 8610 ||| || | || | | |||||| | ||| | || Sbjct 2933991 TGCACAGAAGACCTCTGTCGCGCTGGCGGGGATTGGTGCAGCAGCAGCTGCTACCGCTTC 2933932 Query 8611 CGGAGCCGGAGTGGCGGGGTATAACCTGCTCAAAACCACTTCACGTCAGATTACCGAATC 8670 || | || || || || | ||| || |||||| |||| |||| |||||| | | Sbjct 2933931 CGCTGTAGGCGTTGCTGGCTTTAATCTTCTCAAATCCACATCACAGCAGATTGCATCCAC 2933872 Query 8671 AGACCGCTGGGCAAAGTCACTTAACATGTCCACGCAGTCCCTGTTAGCCTGGCAATATGC 8730 || | ||||| |||||||| || ||||| || ||| || | |||||||| | || Sbjct 2933871 GGATCAGTGGGCTAAGTCACTGAAGATGTCGACCCAGGAGTTGCTGGCCTGGCAGTTCGC 2933812 Query 8731 TGCAGAAAAAGCAGGTGTTTCCGGCGATCAGATGGCCGATATCTTTAAAGATGTCGGAGA 8790 || || || || || | |||||| | ||||| || || || ||||| || | || Sbjct 2933811 CGCCGAGCGTGCGGGCGTGGCTGGCGATAACATGGCTGACATATTCAAAGACCTCAGCGA 2933752 Query 8791 CAAAATCGGTGATGCCGTTCTTAATAAATCTGGTGAGGCGGTCGGTGCGCTGGACGCTCT 8850 |||||||||||| || || || ||||| || || ||||| || | |||||| | ||||| Sbjct 2933751 CAAAATCGGTGACGCGGTACTGAATAAGTCAGGCGAGGCCGTTGACGCGCTGAATGCTCT 2933692 Query 8851 GGGTTTGTCGGCTAAGAAACTGGCCGGAGAATCTCCCGACAAGCAACTCCTGGCTATCAG 8910 || |||| ||| | |||||| | | ||||||||| ||||| | ||||| || | Sbjct 2933691 TGGCCTGTCTGCTGACAAACTGTCGAAGGTATCTCCCGATAAGCAGATGCTGGCGATTGG 2933632 Query 8911 CGACGCACTGGAGAAAGTTAAGTCCAACGCCGAGAAGACTACCATCCTGGAGAGTCTTGG 8970 || || |||| |||| | | ||||||| | ||| ||||||||| || |||||||| Sbjct 2933631 GGAGGCGCTGGGGAAAATCAGCACCAACGCGGGAAAGGTTACCATCCTTGAAAGTCTTGG 2933572 Query 8971 TAATGACCTGTCAAAGATGCTGCCGCTCCTGGACAATGGCAGTGAAAAGCTGCGTCAGTA 9030 ||| ||||||||||| |||||||||| | || || || ||||||||||| ||| Sbjct 2933571 TAACGACCTGTCAAAACTGCTGCCGCTGTTCGATAACAACAATGAAAAGCTGCAAAAGTT 2933512 Query 9031 TATGGATGCCGCGAAGAAGTTTGGTGTGGCGCCCGATGACGCAGATATTGAAAAGCTGGT 9090 ||| | ||||||| | | ||||| || |||||| || ||| || | ||||| Sbjct 2933511 TATCCGTATCGCGAAGGATTACGGTGTAGCACCCGATCCGGCGTCTATCGATGACCTGGT 2933452 Query 9091 CAGAGTCAACGCCCTGTTTGAGGATATGGAGACGCAGGTCAACGGCGTCAAAATTGAACT 9150 | ||||||| | | || || ||||| ||||||| || ||| | ||||| || | Sbjct 2933451 GAAGGTCAACGACATCTTCCTCGACATGGAAGCGCAGGTTAAAGGCCTGAAAATGGAGAT 2933392 Query 9151 TGCTG 9155 ||||| Sbjct 2933391 TGCTG 2933387 Score = 136 bits (150), Expect = 1e-27 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 6051 CCATTGTCAGCGCGTGAATTTATTGCTGCGCAGGCTTCTCAGGGTGAAATAACCACCCGT 6110 || ||||| || || || ||||| || || ||||| | |||||| ||||||| ||||| Sbjct 2936435 CCCTTGTCTGCCCGGGAGTTTATCGCGGCTCAGGCAACGCAGGGTCAAATAACTACCCGC 2936376 Query 6111 ATTGTTATTCGCTACCGTGCCGGAGTTACCA--GAAAACATCGCATCTTGTTTCGTGGTG 6168 || ||| |||||||| |||||| | || | || ||| || ||| | || |||||| Sbjct 2936375 ATAACTATCCGCTACCGCGCCGGACTAACGAACGACAAC--CGAATCGTCTTCCGTGGTC 2936318 Query 6169 CTGTGTATAACATCCATGGTGTTCTGCCCGATCCAAAAAGCGGACGTGAATACCTGACGC 6228 | || ||||| | || || || || ||| | ||||||| | ||||||||||| | Sbjct 2936317 AGATTTACAACATTGAGGGGGTACTCCCTGATGCTGTAAGCGGAAGGGAATACCTGACCC 2936258 Query 6229 TTCCCTGTTCTGAGGGTGTTAATGATGGCTGATAGTGT 6266 | || ||||| ||||| |||||||||||||||| |||| Sbjct 2936257 TGCCATGTTCAGAGGGGGTTAATGATGGCTGATGGTGT 2936220 Score = 111 bits (122), Expect = 4e-20 Identities = 205/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 9656 AGTTACATGCGTCAGATTGAGCTGATCGATACCACGGGCaaaaaaaCTGCTGTGGTGACC 9715 || ||| ||| ||||||| ||||| |||||||| || ||||| || |||| || || Sbjct 2932838 AGCTACCAGCGGCAGATTGCCCTGATTGATACCACCGGTAAAAAGACGGCTGAAGTAACA 2932779 Query 9716 GAGCAGCAAAAACTGCAGTTCGATATAGCTGACGGCAAGTTGCAGGGGCTTAACGAAACC 9775 ||| || || |||||||||||||| |||||||| || || || |||||||| | Sbjct 2932778 GAGGCCCAGAAGCTGCAGTTCGATATTGCTGACGGGAAACTGGCAGGCATTAACGAAGCA 2932719 Query 9776 CAGAAGAAACGA--CTTGCGTCTCTGGCTCAGGAAGTTGATCGCCTTAATGCCGTCAAAA 9833 |||| || ||| || || || ||| || ||||| ||||| || || || |||| Sbjct 2932718 CAGA--AATCGAGGCTGGCAGGGCTTGCTGCTGAGGTTGACCGCCTGAACGCAGTTAAAA 2932661 Query 9834 AAGCTAATGAAGAAAACGCGAAGGTAGCGGCGTTCGTGGCAAATCTGCAGGAGCAG-AAC 9892 | || || || | ||||| ||||| | ||| || || || |||| | | || Sbjct 2932660 AGGCCAACATTGAGATGGCGAAAGTAGCTGAGTTTACCGCTAACCT-CAGGGCCGGTAAT 2932602 Query 9893 GAGAATGCACGTGCAGATTTGGGCGTGGATATTCAGGGGGCCGGACTCGGTGACAA 9948 |||| || || | ||| || || || ||||||| ||||| || |||||||| Sbjct 2932601 CAGAACGCCCGCGAAGACCTGAATGTTGACGTTCAGGGAGCCGGGCTTGGTGACAA 2932546 Score = 93.3 bits (102), Expect = 1e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 27616 ATAATGCCCTACCGCTCCTTGGGTGATACCCAGTTCATCAGCGATTGAGTATTGGGTTAT 27675 ||| ||||| || || | |||||| || || |||||||| || | || || || Sbjct 2985187 ATAGTGCCCAACAGCACTTTGGGTAATGTTCATCTCATCAGCAATGTGCTGCTGAGTAAT 2985128 Query 27676 TCCCAATTCTTTCTTTTTTGACTCATACAAAGCCTTAAGCCGCTTAGCGTCTTCGAGCTG 27735 || | | ||| || || |||||||||| ||| ||||| || || |||||||| ||||| Sbjct 2985127 ACCAAGATTTTTTTTCTTGGACTCATACAGAGCTTTAAGGCGTTTGGCGTCTTCAAGCTG 2985068 Query 27736 TTCTGTCGTCAGTGATTTTTTATTTTCCATAGCTTAATTCTAATAGCT 27783 |||||||||||| ||| | ||| ||||| || ||| ||||| || Sbjct 2985067 TTCTGTCGTCAGGAGCTTTGTCGTTTTCATAG-TTTATTTTAATACCT 2985021 >seq1959 Length=43063 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 36136 ATCGCTGACATGCAGAAGCGTCAACGTGATGTAGCAGAACTTGACGCCAGATACACAAAG 36195 ||| | |||||||||| || || || ||||| || | ||| ||||| | ||||||||| Sbjct 9631 ATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACAAAG 9690 Query 36196 GAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 36255 ||| | ||||||||||| || | || ||| |||||| || |||| || ||| || Sbjct 9691 GAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGCCGC 9750 Query 36256 AAGCG 36260 ||||| Sbjct 9751 AAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123897984634326