Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq122 881 0.0 seq1959 89.7 1e-13 >seq122 Length=4874392 Score = 881 bits (976), Expect = 0.0 Identities = 1575/2285 (69%), Gaps = 60/2285 (3%) Strand=Plus/Minus Query 7430 TATCCCTATGTGGTCTGGCAGAACATCACCGGTTCTCCAGAGAACTACATTGCCCAGCGC 7489 |||||||||| ||| ||||||||||| || || |||||||| ||| ||| |||| Sbjct 2935640 TATCCCTATGCGGTGTGGCAGAACATAACAGGCGGACCAGAGAATTACCTTGGAACGCGC 2935581 Query 7490 CCTGACGCAGACTTTTTCACGCTGCAGGTGGATGCATATGCCGACACCGTGGATGAAGTG 7549 |||||||| ||| | ||| || ||||| ||| |||||| |||||| ||||||| Sbjct 2935580 CCTGACGCGGACAGCTACACCCTTCAGGTTGATATCTATGCCAACACCGACAGTGAAGTG 2935521 Query 7550 ATTGCCGTGGCTACTGCGCTGCGGGATGCCATTGAGCCGCACGCGCATATCACGCGCTGG 7609 || |||||||| |||||||| ||||||||||| || | ||| ||||||| || ||| Sbjct 2935520 ATCGCCGTGGCGCGCGCGCTGCGTGATGCCATTGAACCCCGCGCCTATATCACCCGATGG 2935461 Query 7610 GGCGGACAGGAAAGAGACCCCGAAACAAAACGCTATCGCTACTCATTCGATGTTGACTGG 7669 |||| ||||| ||| ||||| ||||| || ||||| ||||||||||| |||||| Sbjct 2935460 GGCGAGCAGGAGCAGGACAGTGAAACGAAACGGTACCGCTATTCATTCGATGTCGACTGG 2935401 Query 7670 ATAGTCACTCGATAAACGTA-----TTATTCAACC-ACCGGCCTTGAGCCGGtttttttA 7723 ||||| |||||| || | ||| |||| ||| || | | ||| ||||||| Sbjct 2935400 ATAGTGTTGCGATAA-CGAAAACCCTTAA-CAACAGACCCGC--TCCGGCGGGTTTTTTA 2935345 Query 7724 TGACC-GGAGATAACAATGTCTGTATTGACGCAAGGTACGCAGCTCTTTGTGCTCGTAAA 7782 | ||| ||||| ||| ||||| || |||| |||||||| ||||||| ||| |||| Sbjct 2935344 TTACCTGGAGAAAACTATGTCAGTCGTGACACAAGGTACTCAGCTCTATGTTCTCGCCGC 2935285 Query 7783 AGGCAAGGTGAGCGAAGTTGAATGTATCACTGCATTTTCACCCGGCAGCAATCCGGCTGA 7842 |||| ||| || || || ||||| || || || || ||||| ||| | || || || || Sbjct 2935284 AGGCGTGGTCAGAGAGGTCGAATGCATTACCGCGTTCTCACCGGGCGGGAACCCCGCCGA 2935225 Query 7843 CCAGATTGAAGACACCTGTCTTTCTGAGCGCTTTGATCGCAGCTATAAGCGTGGTCTTCG 7902 |||||||| |||||||| || |||||| |||| || ||| || ||||| Sbjct 2935224 TCAGATTGAGGACACCTGCCTGAGTGAGCGAAACACGCGCACTTACAAGAAGGGACTTCG 2935165 Query 7903 AACGCCTGGCACAG-CATCACTGACGCTTAACGCTGATCCTAAAAATACCAGCCACATCA 7961 || || ||||||| | ||| ||||| || |||||||| ||| | |||||| | | Sbjct 2935164 CACTCC-GGCACAGGCTTCAGCAACGCTCAATGCTGATCCAGCCAATGCAAGCCACCTGA 2935106 Query 7962 TGCTCTACAACCTGTCCATTTCGGACGACGAAAAGGATCAGGACCTGACCTTCGCGATTG 8021 || | ||||||| | || ||| | |||| || ||||||| || ||| Sbjct 2935105 TGTTAAGCAACCTGGCGGAGTCTTCCGATCA---GGAT---GATTTGACCTTTGCTGTTG 2935052 Query 8022 GATGGTCAGACGGAACCGCATCGCCAACTGCGGCTGAAAATGGTACACCAGGTGCAGTCG 8081 | |||||||| ||| | ||||| | || | ||| |||| || ||||| | Sbjct 2935051 GCTGGTCAGATGGAGAAGACGACCCAACCGTGGGCGCTGCTGGCGCACCTGGCGCAGTTG 2934992 Query 8082 ATGGCCTGGTGCTACCTGATAGCCGCACATGGTTCGTATTCAAAGGCTATGTGTCCGACT 8141 ||||||| | || || |||| ||||| |||| || ||||||||||| || | |||| Sbjct 2934991 ATGGCCTTATTCTGCCGGATACGCGCACCTGGTATGTCTTCAAAGGCTACGTTGCTGACT 2934932 Query 8142 TCCCGTTTGATTTTGCAGCAAACACGGTTGTTTCTACTTCTGCATCTATCCAGCGCTCCG 8201 |||||||||| || || ||||||||||| || | || | || |||||||| | Sbjct 2934931 TCCCGTTTGACTTCCAGGCCAACACGGTTGTGCAGACGACCGCCACCATTCAGCGCTCAG 2934872 Query 8202 GCTCTGCTGTATGGGTGCCAAAAG-TCGTGACCCCA--TAAA-----ATCAGG-GCGGCA 8252 || ||| | ||| | ||||| | | | | || |||| ||| || | | || Sbjct 2934871 GCGCTGGCGCGTGGATTCCAAAGGCTGGCGCAGGCAGCTAAACAACAATCGGGCGTGACA 2934812 Query 8253 ----ACGCC----CTTATTAATCAGGATTAATAATGAAATTAACACTTGATGCACTCAAG 8304 ||||| ||||| ||||| |||||| | ||||| ||| |||| || Sbjct 2934811 TGTCACGCCTAATCTTATATCGCAGGAAAGCACATGAAACTGACACTCGATTCACTAAAA 2934752 Query 8305 GAGTCCGGCGCGTTTACCGGTCGCCCGGTTGAGAAAGAAATCACCTGGACGCAAGGCGAT 8364 | |||||||| || || ||||| || || || ||| |||||||||||| ||| | ||| Sbjct 2934751 AAATCCGGCGCATTCACAGGTCGTCCTGTGGAAAAACAAATCACCTGGAAGCAGCGTGAT 2934692 Query 8365 aaaaaaaTCACCGCGACCGTGTATGTTCGCCCGATGGGTTATCACACAGCAACGTCCGAT 8424 || || | || || || |||| | || ||| ||||||| |||| || || || || Sbjct 2934691 GAAGAATTAACAGCCACGGTGTTCATCCGACCGTTGGGTTACCACAGCGCCACATCTGAC 2934632 Query 8425 GTGCTGGCTTTTGGTGGTAAGGTCGATGGTGTGGCAGGGCGTATCGCCGCATCCATCTGC 8484 || ||||| || || ||||| || || | || ||||||||||| || |||||| Sbjct 2934631 GTACTGGCCCATGTGGGCAAGGTTGACGGCATTGCCGGGCGTATCGCAGCCAGCATCTGT 2934572 Query 8485 GATGAACATGGTAAACCCATCTTCACCCCGGCTGACATTACTGGTGAGGCAGATCCTGAA 8544 |||||| |||| | || ||||||| || || |||||||| ||||| || || || Sbjct 2934571 GATGAAGATGGCCACCCGGTCTTCACGCCTCAGGATATTACTGGCGAGGCTGACCCCGAT 2934512 Query 8545 CGTGGTGCACTGGATGGCGGCCTGACGGTAGCACTGCTTCTGGCCATTCAGGAAGTTAAC 8604 || || || || ||||||| ||||| | || || || | ||||||||||| || ||| Sbjct 2934511 CGCGGCGCGCTTGATGGCGCACTGACTATCGCGCTCCTGGTTGCCATTCAGGAGGTGAAC 2934452 Query 8605 GATCTGGGAAAGACTTCGAGCTCAGCGCCGAAGACGAATTCTGGTGCGAGCTCGTCCTCA 8664 |||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||| Sbjct 2934451 GATCTGGGAAAGACCACCAACTCAGCGCCGAAGACGAATTCTGGTGTGAGCTCGTCCTCA 2934392 Query 8665 ACGGAATCGGAGGCAGAACAATCGCCGAAGCGCGGGAAGTCCTCTCATTCAAAGAGTCCC 8724 |||||||||| || ||||| ||||||||||| | ||| |||| ||| |||| || Sbjct 2934391 ACGGAATCGGCGGAAGAACCATCGCCGAAGCCAGAGAAAACCTCAGCTTCCGGGAGTACC 2934332 Query 8725 AACTCTGGGCAAAGTACCGGGAACGATACGGGAGTCTGAACCCTATGTTGCGGGTTGAGT 8784 | ||||||| |||||||| | ||||| | |||||||| ||| |||| ||||| Sbjct 2934331 AGCTCTGGGTTAAGTACCGAGCCGCCTACGGCAATCTGAACCAGATGATGCGTACTGAGT 2934272 Query 8785 GGGGTGCCGGGCTGGTGAGCAGCATGATAGCCAACGTTAACAGAGACCCCAAGCGCCCAC 8844 |||| || | ||| | ||||| | | |||||||| ||| | | || || ||||| Sbjct 2934271 GGGGGGCGGCGCTCATAGCCAGCACGCTGGCCAACGTCAACCGGGGCCAGAATGACCCAC 2934212 Query 8845 CATTCAACCCGACCGATTTCACACTTCACTTTACCAAAGTCAAAGCTGCTG-ATGGACCA 8903 | | ||| ||| | ||||| | |||| | || ||| | ||| | | Sbjct 2934211 CTTACAA-------AATTACTGACTTCGC---ACCACA--CA----TGCAGAATGAAGCC 2934168 Query 8904 ATCTCGTTAGAGGAAGCCAGAGC-CAGCTGGAC--ATAATGCCGCCAACGGAGAGTTTAT 8960 || | || || |||| || ||| | || |||| || ||||| || Sbjct 2934167 ATAAGCCTTGAAGATGCCATGGCTCAGTGGAACTGATAAAAACG----TGGAGACACAAT 2934112 Query 8961 GGCTTCCAAATCACTGGGCACGCTGACGATCGACCTGATTGCCAAAGTGGGCGGTTTTGT 9020 ||| ||||| || ||||| |||||| ||||||| |||| ||||| ||||||||||| Sbjct 2934111 GGCCAGTAAATCTCTTGGCACACTGACGCTCGACCTTGTTGCAAAAGTTGGCGGTTTTGT 2934052 Query 9021 CTCAGGCCTCTCGCAGGCTGAGCGAGCTTCACAAAAATGGCGTAAGCAGGTAAAGGAGGA 9080 ||| ||| | |||| || |||| ||| |||||| |||||||||| ||||||| Sbjct 2934051 CTCCGGCATGGACAAGGCGGAAAGAGCATCAGCGAAATGGGGTAAGCAGGTTCAGGAGGA 2933992 Query 9081 TGCCNNNNNNNNNNNNNNNNNCATGACCGGATTCGCAACAGCAGTCGGGGCTGCAGCCAT 9140 ||| || | || | | |||||| | ||| | || Sbjct 2933991 TGCACAGAAGACCTCTGTCGCGCTGGCGGGGATTGGTGCAGCAGCAGCTGCTACCGCTTC 2933932 Query 9141 CGGAGCCGGAGTGGCGGGGTATAACCTGCTCAAAACCACTTCACGTCAGATTACCGAATC 9200 || | || || || || | ||| || |||||| |||| |||| |||||| | | Sbjct 2933931 CGCTGTAGGCGTTGCTGGCTTTAATCTTCTCAAATCCACATCACAGCAGATTGCATCCAC 2933872 Query 9201 AGACCGCTGGGCAAAGTCACTTAACATGTCCACGCAGTCCCTGTTAGCCTGGCAATATGC 9260 || | ||||| |||||||| || ||||| || ||| || | |||||||| | || Sbjct 2933871 GGATCAGTGGGCTAAGTCACTGAAGATGTCGACCCAGGAGTTGCTGGCCTGGCAGTTCGC 2933812 Query 9261 TGCAGAAAAAGCAGGTGTTTCCGGCGATCAGATGGCCGATATCTTTAAAGATGTCGGAGA 9320 || || || || || | |||||| | ||||| || || || ||||| || | || Sbjct 2933811 CGCCGAGCGTGCGGGCGTGGCTGGCGATAACATGGCTGACATATTCAAAGACCTCAGCGA 2933752 Query 9321 CAAAATCGGTGATGCCGTTCTTAATAAATCTGGTGAGGCGGTCGGTGCGCTGGACGCTCT 9380 |||||||||||| || || || ||||| || || ||||| || | |||||| | ||||| Sbjct 2933751 CAAAATCGGTGACGCGGTACTGAATAAGTCAGGCGAGGCCGTTGACGCGCTGAATGCTCT 2933692 Query 9381 GGGTTTGTCGGCTAAGAAACTGGCCGGAGAATCTCCCGACAAGCAACTCCTGGCTATCAG 9440 || |||| ||| | |||||| | | ||||||||| ||||| | ||||| || | Sbjct 2933691 TGGCCTGTCTGCTGACAAACTGTCGAAGGTATCTCCCGATAAGCAGATGCTGGCGATTGG 2933632 Query 9441 CGACGCACTGGAGAAAGTTAAGTCCAACGCCGAGAAGACTACCATCCTGGAGAGTCTGGG 9500 || || |||| |||| | | ||||||| | ||| ||||||||| || ||||| || Sbjct 2933631 GGAGGCGCTGGGGAAAATCAGCACCAACGCGGGAAAGGTTACCATCCTTGAAAGTCTTGG 2933572 Query 9501 TAATGACCTGTCAAAGATGCTGCCGCTCCTGGACAATGGCAGTGAAAAGCTGCGTCAGTA 9560 ||| ||||||||||| |||||||||| | || || || ||||||||||| ||| Sbjct 2933571 TAACGACCTGTCAAAACTGCTGCCGCTGTTCGATAACAACAATGAAAAGCTGCAAAAGTT 2933512 Query 9561 TATGGATGCCGCGAAGAAGTTTGGTGTGGCGCCCGATGACGCAGATATTGAAAAGCTGGT 9620 ||| | ||||||| | | ||||| || |||||| || ||| || | ||||| Sbjct 2933511 TATCCGTATCGCGAAGGATTACGGTGTAGCACCCGATCCGGCGTCTATCGATGACCTGGT 2933452 Query 9621 CAGAGTCAACGCCCTGTTTGAGGATATGGAGACGCAGGTCAACGGCGTCAAAATTGAACT 9680 | ||||||| | | || || ||||| ||||||| || ||| | ||||| || | Sbjct 2933451 GAAGGTCAACGACATCTTCCTCGACATGGAAGCGCAGGTTAAAGGCCTGAAAATGGAGAT 2933392 Query 9681 TGCTG 9685 ||||| Sbjct 2933391 TGCTG 2933387 Score = 138 bits (152), Expect = 3e-28 Identities = 184/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 6545 TGGCGAGATGTTGCGACTGTCTGGGCCGAAGTTTCACCATTGTCAGCACGTGAATTTATT 6604 ||||| || | || | || ||||| || || || ||||| || || || ||||| Sbjct 2936471 TGGCGCGACTTGGCTATGGTGTGGGCTGACGTGGTGCCCTTGTCTGCCCGGGAGTTTATC 2936412 Query 6605 GCTGCGCAGGCTTCTCAGGGTGAAATAACCACCCGTATTGTTATTCGCTACCGTGCCGGA 6664 || || ||||| | |||||| ||||||| ||||| || ||| |||||||| |||||| Sbjct 2936411 GCGGCTCAGGCAACGCAGGGTCAAATAACTACCCGCATAACTATCCGCTACCGCGCCGGA 2936352 Query 6665 GTTACCA--GAAAACATCGCATCTTGTTTCGTGGTGCTGTGTATAACATCCATGGTGTTC 6722 | || | || ||| || ||| | || |||||| | || ||||| | || || | Sbjct 2936351 CTAACGAACGACAAC--CGAATCGTCTTCCGTGGTCAGATTTACAACATTGAGGGGGTAC 2936294 Query 6723 TGCCCGATCCAAAAAGCGGACGTGAATACCTGACGCTTCCCTGTTCTGAGGGTGTTAATG 6782 | || ||| | ||||||| | ||||||||||| || || ||||| ||||| ||||||| Sbjct 2936293 TCCCTGATGCTGTAAGCGGAAGGGAATACCTGACCCTGCCATGTTCAGAGGGGGTTAATG 2936234 Query 6783 ATGGCTGATAGTGT 6796 ||||||||| |||| Sbjct 2936233 ATGGCTGATGGTGT 2936220 Score = 116 bits (128), Expect = 9e-22 Identities = 206/296 (70%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 10186 AGTTACATGCGTCAGATTGAGCTGATCGATACCACCGGCaaaaaaaCTGCTGTGGTGACC 10245 || ||| ||| ||||||| ||||| ||||||||||| ||||| || |||| || || Sbjct 2932838 AGCTACCAGCGGCAGATTGCCCTGATTGATACCACCGGTAAAAAGACGGCTGAAGTAACA 2932779 Query 10246 GAGCAGCAAAAACTGCAGTTCGATATAGCTGACGGCAAGTTGCAGGGGCTTAACGAAACC 10305 ||| || || |||||||||||||| |||||||| || || || |||||||| | Sbjct 2932778 GAGGCCCAGAAGCTGCAGTTCGATATTGCTGACGGGAAACTGGCAGGCATTAACGAAGCA 2932719 Query 10306 CAGAAGAAACGA--CTTGCGTCTCTGGCTCAGGAAGTTGATCGCCTTAATGCCGTCAAAA 10363 |||| || ||| || || || ||| || ||||| ||||| || || || |||| Sbjct 2932718 CAGA--AATCGAGGCTGGCAGGGCTTGCTGCTGAGGTTGACCGCCTGAACGCAGTTAAAA 2932661 Query 10364 AAGCTAATGAAGAAAACGCGAAGGTAGCGGCGTTCGTGGCAAATCTGCAGGAGCAG-AAC 10422 | || || || | ||||| ||||| | ||| || || || |||| | | || Sbjct 2932660 AGGCCAACATTGAGATGGCGAAAGTAGCTGAGTTTACCGCTAACCT-CAGGGCCGGTAAT 2932602 Query 10423 GAGAATGCACGTGCAGATTTGGGCGTGGATATTCAGGGGGCCGGACTCGGTGACAA 10478 |||| || || | ||| || || || ||||||| ||||| || |||||||| Sbjct 2932601 CAGAACGCCCGCGAAGACCTGAATGTTGACGTTCAGGGAGCCGGGCTTGGTGACAA 2932546 >seq1959 Length=43063 Score = 89.7 bits (98), Expect = 1e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 35123 GAGCTGAAGCAGGCGACCGCCACCATCGCTGACATGCGGAAGCGTCAACGTGATGTAGCA 35182 || || |||| ||| | | || ||| | ||||||| || || || || ||||| || Sbjct 9607 GATCTTAAGCTGGCTAAGTCAACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCT 9666 Query 35183 GAACTCGACGCAAGATACACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTC 35242 | ||||||||||| |||||||||||| | ||||||||||| || | || ||| |||| Sbjct 9667 GCACTCGACGCAAAGTACACAAAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTC 9726 Query 35243 CGTGCTGATGTTTCTGCTGGTCGTAAGCG 35271 || || |||| || ||| || ||||| Sbjct 9727 CGCAATGCTGTTGATGATGGCCGCAAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120173461659342