Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq1959 82.4 2e-11 >seq1959 Length=43063 Score = 82.4 bits (90), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 38530 TCCACAATCGCTGACATGCAGAAGCGTCAACGTGACGTAGCAGAACTCGATGCCAGATAT 38589 || |||||| | |||||||||| || || || || || || | |||||| || | || Sbjct 9625 TCAACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTAC 9684 Query 38590 ACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTCCGTGCTGATGTTTCTGCT 38649 ||||||||| | ||||||||||| || | || ||| |||||| || |||| || | Sbjct 9685 ACAAAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGAT 9744 Query 38650 GGGCGTAAGCGCCTGCAAGTCGCCGCCACCTGTGCAAAGTCAACGACCGGAGCCAGCGGC 38709 || || ||||| ||| |||| | | || | ||| | | ||| || |||| Sbjct 9745 GGCCGCAAGCGGTTGCGCATCGCAGTCGCCAGGAAAAACGCCGCCACC---ACCCCCGGC 9801 Query 38710 ATGGGCGATGGAGAAAGCCCAGGACTTACAG 38740 |||| |||| || || | ||| |||| ||| Sbjct 9802 GTGGGTGATGCAGGAACCGCAGAACTTGCAG 9832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132882916347174