Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019714.1 Length=39026 Score E Sequences producing significant alignments: (Bits) Value seq302 194 4e-45 seq154 89.7 1e-13 seq1959 86.0 2e-12 >seq302 Length=239003 Score = 194 bits (214), Expect = 4e-45 Identities = 281/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 24407 CTGATGTTTATGCTCGTCTGTATCTGCATCTTTCGCATCATCTATGCCGAACAAACCATT 24466 ||| || | | |||| ||||| || ||||| || | ||||| || | |||| | |||| Sbjct 149601 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 149660 Query 24467 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCCGTAACTTGTGCAGAATCCATTCC 24526 || |||||||| | |||||| || || || || || ||||| || || || |||||||| Sbjct 149661 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 149720 Query 24527 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGACTGTT--TTCGCCATCG 24584 |||||||| || || || | ||| | || | |||||||| |||| ||| || || Sbjct 149721 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 149778 Query 24585 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 24644 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 149779 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 149838 Query 24645 ATTGATAAAAACAGGCCATTCAGCAGCGGCTTAACACCCTCAAGAATGTCTTCGCAGCTT 24704 || | || || || || || || || ||||| ||||| | ||| ||||| ||| | Sbjct 149839 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 149898 Query 24705 CTGTATTTATATTTGCCGAATGAGTTGTATTGATTCTTTGGCGCGTTCAGATTCTCCTGA 24764 | |||||||| || ||||| |||||| || |||||||| ||||| || | |||| Sbjct 149899 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 149958 Query 24765 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 24799 || |||| || |||||||||||||||| ||||| Sbjct 149959 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 149993 >seq154 Length=560718 Score = 89.7 bits (98), Expect = 1e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 30920 ATTGCTCACATCTCCGGAAGCCTGAAGGCGATGGCGAAAGACCTGAAAACGCCAGTTATC 30979 |||||| | ||||| || |||| || |||||||||| ||||| ||||| || Sbjct 275575 ATTGCTGAGATCTCACGATCTTTGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTC 275516 Query 30980 TCCCTAAGTCAGCTTTCGCGCGATGTTGAGAAGCGACCAAACAAACGCCCGACAAACGCA 31039 || || |||||| ||| | ||| |||| || | ||||| || ||| || Sbjct 275515 GCCTTATCACAGCTTAACCGCTCATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCA 275456 Query 31040 GATTTGCGTGATTCAGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGG 31099 ||||||||||| |||||| ||||| ||||| || |||| ||||| | ||||||| Sbjct 275455 GATTTGCGTGAGTCAGGATCGATTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGT 275396 Query 31100 GAAGCAGTATATGACGAGAACAGT 31123 || | || ||| |||| |||||| Sbjct 275395 GACGAGGTGTATCACGAAAACAGT 275372 >seq1959 Length=43063 Score = 86.0 bits (94), Expect = 2e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 36404 ATCGCTGACATGCAGAAGCGTCAACGTGATGTAGCAGAACTCGACGCCAGATACACAAAG 36463 ||| | |||||||||| || || || ||||| || | ||||||||| | ||||||||| Sbjct 9631 ATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACAAAG 9690 Query 36464 GAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 36523 ||| | ||||||||||| || | || ||| |||||| || |||| || ||| || Sbjct 9691 GAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGCCGC 9750 Query 36524 AAGCG 36528 ||||| Sbjct 9751 AAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124752321089928