Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq302 197 3e-46 seq122 113 1e-20 seq1959 87.8 5e-13 >seq302 Length=239003 Score = 197 bits (218), Expect = 3e-46 Identities = 282/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 23599 CTGATGTTTATGTTCGTCGGTATCTGCATCTTTCGCATCATCAATGCCGAACAAACCATT 23658 ||| || | | | || || || || ||||| || | |||||||| | |||| | |||| Sbjct 149601 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 149660 Query 23659 AAGGCAATACTTGCGCGCATAAGAGCTTGTAGCTCCAGTAACTTGTGCAGAATCCATTCC 23718 ||| |||||||| | ||||| || || || || |||||||| || || || |||||||| Sbjct 149661 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 149720 Query 23719 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCAGTTGCCGTATGACTGTT--TTCGCCATCG 23776 |||||||| || || || | ||| | ||| | |||||||| |||| ||| || || Sbjct 149721 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 149778 Query 23777 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 23836 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 149779 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 149838 Query 23837 ATTGATAAAAACAGGCCATTCAGTAACGGCTTAACGCCTTCAAGAATGTCTTCGCAGCTT 23896 || | || || || || || | || ||||| || || | ||| ||||| ||| | Sbjct 149839 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 149898 Query 23897 CTGTATTTATATTTACCGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTCCTGA 23956 | |||||||| |||||||| ||||||||| |||||||| ||||| || | |||| Sbjct 149899 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 149958 Query 23957 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 23991 || |||| || |||||||||||||||| ||||| Sbjct 149959 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 149993 >seq122 Length=4874392 Score = 113 bits (124), Expect = 1e-20 Identities = 360/547 (66%), Gaps = 26/547 (5%) Strand=Plus/Minus Query 21949 GAACTGGCTAAGATTTGGCTTGCTATTGAAAGAAGCCGTGCGTCTACGTCAAATAAGCTC 22008 || ||||| || | ||||| || | |||| | | | || | | || || ||||| Sbjct 2987293 GAGCTGGCGAAAGTGTGGCTGGCGCTGGAAAATAACAAGGTGTTTTCATCTAACAAGCTG 2987234 Query 22009 CTTCATCAGATGCTTATGCTGTGGGGGGCGAGGCTCTCAGAGCTTAGGCTGGCAACAAAG 22068 || ||||||||||| |||||||||| || || | ||||| ||| |||| |||| Sbjct 2987233 CTGCATCAGATGCTGCTGCTGTGGGGAGCCAGATTGTCAGAACTTCGGCTCTCAACCCCT 2987174 Query 22069 ACAGAATTTGAC-CTGCTGGACAACGTATGGACCGTACCGAAAGAGCATAGCAAGATGGG 22127 | || || || ||| | || | ||||||| ||| | ||| |||||||| Sbjct 2987173 GCTGAGTTCAACACTGAAG-ACTTCATATGGACTACACCTGTCGCCCATTCGAAGATGGG 2987115 Query 22128 TAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTTCTCGAAAAG------GC 22181 |||||||||||||| || || || || || || ||||| | | | |||| | || Sbjct 2987114 GAATGTTATCCGCCGCCCTATATTTGAGCAGATGAAGCCATATGTTGAAAGGCTACTTGC 2987055 Query 22182 CATGACAACGTACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGATCAGC-- 22239 |||| ||| | | |||||| || ||| | || | ||||| ||||| | Sbjct 2987054 GATGAAAACCC-CGGTAATGTTC-----CCCGGACAGGAACTGGACAAAGCGATCGACCG 2987001 Query 22240 ATCGCTGCAGCCAACCGATTCGTAAACAGAATAAGGGGAGG--GATGGATCTAGGTTACT 22297 ||| || | || || | | | | || | | | | | | ||| ||| | | | Sbjct 2987000 ATC-CTCC-GCAAATCTGTACATGAAAAACCT--GCGCACGAAGATAGATATCCCCGAAT 2986945 Query 22298 GGCGAACACATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCGAGATGAATGT--CGA 22355 |||| || ||||||||||| | | || ||||| | || || ||| || | Sbjct 2986944 GGCGCACTCATGATTTCAGGCGCTCACTGGTTACCAACTTATC--AGGCGAAGGTATCAT 2986887 Query 22356 GCCTCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTATACAA 22415 ||| || || || || ||||| || ||||| || |||||| ||||| | || || || Sbjct 2986886 GCCCCACGTCACCGAAAAGATGCTGGGGCATGAGCTGGGCGGGGTAATGGCGGTTTATAA 2986827 Query 22416 TAAACACGACTGGATAGAGGCTCAGCGCAAAGCGTATGAGCTTCACGCTGATAAATTGTT 22475 ||||| |||||| | |||| ||||||||||| ||||||||| ||||||||||| | | Sbjct 2986826 CAAACATGACTGGCTTGAGGAGCAGCGCAAAGCCTATGAGCTTTACGCTGATAAAGTCCT 2986767 Query 22476 CTGGCAC 22482 |||||| Sbjct 2986766 GTGGCAC 2986760 >seq1959 Length=43063 Score = 87.8 bits (96), Expect = 5e-13 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 36946 TCCACAATCGCTGACATGCAGAAGCGTCAACATGATGTAGCAGAACTCGACGCCAGATAC 37005 || |||||| | |||||||||| || || | ||||| || | ||||||||| | ||| Sbjct 9625 TCAACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTAC 9684 Query 37006 ACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTCCGTGCTGATGTTTCTGCT 37065 ||||||||| | ||||||||||| || | || ||| |||||| || |||| || | Sbjct 9685 ACAAAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGAT 9744 Query 37066 GGGCGTAAGCG 37076 || || ||||| Sbjct 9745 GGCCGCAAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126518589717240