Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq122 167 7e-37 seq620 120 9e-23 >seq122 Length=4874392 Score = 167 bits (184), Expect = 7e-37 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44780 GACCTGTGATCTGCCTGTTCCTGCTGATGTCGCTGGTGGGCTGCTCGAATACGCGCACCG 44839 |||||||| ||| |||||||||||| | ||||||| |||||||||| ||| ||| || Sbjct 2960928 GACCTGTGCTCTCGCTGTTCCTGCTGCTATCGCTGGCAGGCTGCTCGACTACACGCTTCG 2960869 Query 44840 TTTACGTGCCAGCGCAATGCACGCCGATACCGACGGACCTAACGCAGCCGATGATAGTAC 44899 | ||||| ||||||||||||||||| || ||| | | | | |||| ||| | |||| Sbjct 2960868 TCTACGTTCCAGCGCAATGCACGCCTATCCCGGCCTCGTTGATGAAGCCAATGCTGGTAC 2960809 Query 44900 CGCTGCCGCCGGCTCAATAACGTACTGCCAGGCTGTGCTCTGGATTAAGCCGCTGCTGGC 44959 ||||||| ||||| | | |||||||| ||||| || || |||||| | || |||| | Sbjct 2960808 CGCTGCCCCCGGCCCCCTGACGTACTGTCAGGCGGTACTGTGGATTGACCCATTGCTAAC 2960749 Query 44960 CGTGATTGAGAAGGGCAACAATAACCTGGCTGGCATACGGCAGATTGAAAAA 45011 | |||||| ||| ||||| | ||||||||||| || | |||||| || Sbjct 2960748 GGCGATTGACCAGGCCAACAGCCAACTGGCTGGCATCCGAGACATTGAACAA 2960697 Score = 96.9 bits (106), Expect = 1e-15 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 21448 AATTAATCAGCAACCAGCCACATGTCAGATTCTTCAAACATCTCTTCAAGCATACGATTA 21507 |||| |||| |||| |||| || | ||| |||||||||||||||| || || Sbjct 2402400 AATTCTTCAGACACCATCCACTGATCGGCTTCCTCAAACATCTCTTCAATAATGCGTAAC 2402341 Query 21508 AGCCGTTCTTTCTCTGTTTTCGTGCAGTTGCTGTTTAGCGCGTTCGCCTGCATCGGCTTT 21567 ||| || || |||| || || || || | |||| ||||||||||| ||| Sbjct 2402340 AGCGTGGACTTATCGCTTTTACTGGCGTCACTTTTCACGCCGTTGGCCTGCATCGGTTTT 2402281 Query 21568 ACCTTCACTTCGGCACCAGGGAAAATCTGGTGCACCCGCTTCGTCAGTTCGGCCAGAATG 21627 ||||| || ||| | || || | | ||||| ||||| ||| |||||||| || Sbjct 2402280 ACCTTGACCAGCGCATCGGGAAACACACGCTGCACGCGCTTTTCCAGCTCGGCCAGGATC 2402221 Query 21628 ATCTCCCTGGCCCCTTCG--AGCCCCTCAACATTTCGCTTGTCATAAACCAGTTCAACAA 21685 | || ||| |||| || ||| |||| || ||||||||||||| ||||||||||| Sbjct 2402220 AGCTGTTCGGCA--TTCGGCAGACCCGCAACGTTGCGCTTGTCATAAATCAGTTCAACAA 2402163 Query 21686 ACAT 21689 |||| Sbjct 2402162 ACAT 2402159 >seq620 Length=44282 Score = 120 bits (132), Expect = 9e-23 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 44780 GACCTGTGATCTGCCTGTTCCTGCTGATGTCGCTGGTGGGCTGCTCGAATACGCGCACCG 44839 |||||||| ||| |||| ||| ||| | ||||||| || ||||| | ||| || | | Sbjct 14644 GACCTGTGCTCTCGCTGTGCCTACTGCTATCGCTGGCCGGTTGCTCAACTACACGAATAG 14703 Query 44840 TTTACGTGCCAGCGCAATGCACGCCGATACCGACGGACCTAACGCAGCCGATGATAGTAC 44899 | |||| |||||||||||||||||| || ||| | | | | |||| ||| | |||| Sbjct 14704 TCTACGAGCCAGCGCAATGCACGCCTATCCCGGCCTCGTTGATGAAGCCAATGCTGGTAC 14763 Query 44900 CGCTGCCGCCGGCTCAATAACGTACTGCCAGGCTGTGCTCTGGATTAAGCCGCTGCTGGC 44959 | ||||| ||||| | | |||||||| ||||| ||||| |||||| | | ||| ||| | Sbjct 14764 CACTGCCCCCGGCACCCTGACGTACTGTCAGGCGGTGCTGTGGATTGATCAGCTACTGAC 14823 Query 44960 CGTGATTGA 44968 || || || Sbjct 14824 AGTCATCGA 14832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145038812207968