Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq302 147 6e-31 seq122 123 7e-24 >seq302 Length=239003 Score = 147 bits (162), Expect = 6e-31 Identities = 267/395 (68%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 25880 CTGATGTTTATGCTCGTCGGTATCTGCATCTTTAGCATCATCAATGCCGAACAAACCATT 25939 ||| || | | |||| || || || ||||| || | |||||||| | |||| | |||| Sbjct 149601 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 149660 Query 25940 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCCGTAACTTGTGCAGAATCCATTCC 25999 || |||||||| | |||||| || || || || || ||||| || || || |||||||| Sbjct 149661 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 149720 Query 26000 TTTCTNNNNNNNNNNNNNNNNNNNTAGCGCGGTTGCCGTATGACTGTT--TTCGCCATCA 26057 |||| | || | |||||||| |||| ||| || || Sbjct 149721 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 149778 Query 26058 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 26117 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 149779 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 149838 Query 26118 ATTGATAAAAACAGACCATTCAGTAACGGCTTAACGCCTTCAAGAATGTCTTCGCAGCTT 26177 || | || ||||| || || | || ||||| || || | ||| ||||| ||| | Sbjct 149839 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 149898 Query 26178 CTGTATTTATATTTGCCGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTCCTGA 26237 | |||||||| || ||||| ||||||||| |||||||| ||||| || | |||| Sbjct 149899 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 149958 Query 26238 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 26272 || |||| || |||||||||||||||| ||||| Sbjct 149959 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 149993 >seq122 Length=4874392 Score = 123 bits (136), Expect = 7e-24 Identities = 358/543 (66%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 40281 GAAGACATAAAATTTGTGGTGGTCGGCCATCACATCCGCTTAGGACATGCACAA-CGTCT 40339 ||||| |||| ||||||| |||||||| ||| |||| ||||| | || || Sbjct 2945388 GAAGAAATAATGATTGTGGTTGTCGGCCACCACTCCCGCCGCA-ACATGGCTATGCGCCT 2945330 Query 40340 TGCTGCGCTGCTGCATGCTCATCTGCTGGTTGATGACGATAACCACGGCGCGAACTGGAA 40399 |||| |||| ||||||| ||||| ||||||| || | |||| ||||||||||| Sbjct 2945329 GGCTGAATCGCTGGATGCTCACCTGCTTATTGATGAAGAGGGCAACGGGGCGAACTGGAA 2945270 Query 40400 TCATCGCCGCGCGCTTGAGTGGGCAGCAGAACAAACCTGCCGGGTAGTGGTGTTGGAAGA 40459 ||| ||||| || | | ||||||| | || ||| |||| ||| | | ||||| Sbjct 2945269 TCACCGCCGTGCCATCGCATGGGCAGGCCAGCAGGATTGCAGGGTGGTGATTGTTGAAGA 2945210 Query 40460 CGACGCACTGCCAGTACATGGATTCGCCGAAAAGGTAACGTACTGGCTGGCGCGCTTCCC 40519 || || || || || | ||| ||||| | || | | ||| ||| ||||| Sbjct 2945209 TGATGCGCTTCCTGTTCCTGGCTTCGCGTCACTGGCTCAGGAATGGGTGGATAAATTCCC 2945150 Query 40520 TGACGACATGCTGAGC-TTTTATCTCGGTACCGGCCGACCGCCGCAGTATCAGAAAGAGA 40578 |||| |||| ||| | || || ||||| || || || |||||||| || |||| ||| Sbjct 2945149 TGACAACAT-CTGTTCGTTCTACCTCGGCACGGGACGCCCGCCGCAATACCAGATGCAGA 2945091 Query 40579 TTGCCGGAATGCTGGTGGAATCAGACAGAGTAAACGCTGATTACCTTGTTCTTAACAAAC 40638 | || | | || | || |||||| | | || ||| | | | | | Sbjct 2945090 TAGCAGCCAGCCTCATCGAGGCAGACAAGCGGCAGTCCGACTACATCACGATGGATAGGC 2945031 Query 40639 TGATTCACGGCGTATGTTATAGCCCTCCTCAGGGCAGGCTGGCGCGC-ATGCTTAACGCA 40697 | | |||||||| || || |||||||| | | | ||| || | || || || Sbjct 2945030 TTTTGCACGGCGTGTGCTACAGCCCTCCACCGAAC-GGCATCAGCACAATCCTGAAGAAC 2944972 Query 40698 TGGAATAAAACGCTGGCAGCTGATTACGCCGTCGGTGAGGCATTCGGTGGCCGGGTGATT 40757 ||||| | || || || || || ||||| ||||| || | || || ||| || Sbjct 2944971 TGGAACAGCACTAAAGCCGCCGACTATGCCGTTGGTGATGCGCTTGGCCGCAAGGTCATC 2944912 Query 40758 TATCCGTGTTACTCGCTGGTGGATCACGCTGACCTCCCGACGGTTGAGCGTCACCCTGAC 40817 |||||||| ||||| |||||||| || || || || | |||||||||| ||||| ||| Sbjct 2944911 TATCCGTGCTACTCACTGGTGGACCATGCCGATGGCCTGCCGGTTGAGCGGCACCCCGAC 2944852 Query 40818 AAC 40820 ||| Sbjct 2944851 AAC 2944849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132758125628940