Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq122 511 1e-140 seq3245 324 4e-84 >seq122 Length=4874392 Score = 511 bits (566), Expect = 1e-140 Identities = 551/728 (76%), Gaps = 6/728 (1%) Strand=Plus/Minus Query 36862 GGTGCGCTGGTGGTGGTTGTGGATGATGGTTCA---AAACCTGCAGCGGTAGTTCCCCAC 36918 |||||||||||||| ||| | |||||||||||| || |||| |||| || | Sbjct 2947378 GGTGCGCTGGTGGTTGTTATCGATGATGGTTCAGCAAAGCCTGTTACGGTC---CCTGAT 2947322 Query 36919 GGCGTGCAGCTGCTTCGCCATGAAACATCACTCGGCATTGTTGCTTCGAAGAACGCCAGC 36978 || || | |||| ||||| ||| | |||| |||||||||||| ||||||||||||||| Sbjct 2947321 GGTGTACGGCTGATTCGCTGTGACATGTCACGCGGCATTGTTGCATCGAAGAACGCCAGC 2947262 Query 36979 CTGTCAGCCCTGATGGATGCCGGGTGCGAGCATCTTTTTCTGTGGGATGATGATGCCTGG 37038 || || |||| ||||| || || |||||||| ||| ||||||| ||||| || ||| Sbjct 2947261 CTCGAGGCTTTGATTGATGCTGGATGTGAGCATCTGTTTTTGTGGGACGATGACGCATGG 2947202 Query 37039 CCTATCGCCGATAACTGGCATCTTCCCTACATCGAATCACCCGAGCCACACCTGGCTTAC 37098 ||||| || | | ||| | | || |||||||| ||||||||||| ||||| |||||| Sbjct 2947201 CCTATAGCTGGTGGATGGGAACAGCCTTACATCGATTCACCCGAGCCGCACCTCGCTTAC 2947142 Query 37099 CAGTTTCTCGATCTTGCTGGCCGCAATAAGCTGAATGACCTTTCGGTGCTTTACCGTGAC 37158 ||||| || || || ||||||| |||||| || ||||| | || || |||| ||| Sbjct 2947141 CAGTTCCTTGACCTGGCTGGCCCACGTAAGCTTAAAGACCTCGCCGTACTGTACCAGGAC 2947082 Query 37159 GATCAGCATGTGGCGTATACCGGGCAGCGCGGCGTTATGCTGTATTACCACCGTAGTGCC 37218 ||| |||| | || || ||||| ||||| ||||| ||||| || |||||||| || Sbjct 2947081 GATAAGCACATCGCTTACACCGGACAGCGAGGCGTGATGCTTTACTACCACCGCTCAGCG 2947022 Query 37219 ATCGAGAAGGTGGGCGGATTTGATCCGGTATACGGTCGCGGCATGTACGAACACAGCGAC 37278 || |||||||| ||||| || || ||||| ||||| |||||||||||||||||| ||| Sbjct 2947021 ATTGAGAAGGTTGGCGGCTTCGACCCGGTTTACGGGCGCGGCATGTACGAACACTCTGAC 2946962 Query 37279 CTTGCCCTGCGCATCCATAACGCCGGAATGACTACGTGGGCTTACGCTGATGCGGCCGGT 37338 || || || ||||| ||||||||||| | || | ||||| | |||||| | || || Sbjct 2946961 CTGGCGCTACGCATTCATAACGCCGGGTTAACCAGCTGGGCGTTCGCTGACGTTGCTGGC 2946902 Query 37339 TCAGAAAAGCTGATTCATTCTCTTGATGAGCATGAGGCTGTAGAGCGTTCCGTACCGAAA 37398 || |||||||||||| | || || || || ||||| || || || ||||| |||||||| Sbjct 2946901 TCCGAAAAGCTGATTTACTCGCTGGACGAACATGAAGCGGTGGACCGTTCAGTACCGAAG 2946842 Query 37399 CCAGACCGGCAGGCGCTGGTGGAACGTAACGTTAAAATCCACAACGAACGGCGTGATGCC 37458 || ||||| | |||||||| | || ||||| | || || ||||| || || || | Sbjct 2946841 CCTGACCGTGAAGCGCTGGTTAAGCGCAACGTGACGATTCATAACGAGCGCCGAGACAGC 2946782 Query 37459 GGGTTTACCGGTTACGTGGAGTATCGACGGCAGCGCGACGTGGTTATTACTACTCTGCTG 37518 || | |||| || | ||||||||| | |||||| |||||||||| || || |||||| Sbjct 2946781 GGATACGCCGGATATGCTGAGTATCGAAGCCAGCGCAACGTGGTTATCACGACACTGCTG 2946722 Query 37519 ACCAGCCAGCCTGACCCGCAGCGCGGTACGAAAATGACCGCCTCTCCTGACATGCTGGCT 37578 ||||||||||||||||| ||||||||||| ||| |||| | | ||||| ||||| Sbjct 2946721 ACCAGCCAGCCTGACCCACAGCGCGGTACCAAACTGACTCCATTATCTGACCTGCTGAGA 2946662 Query 37579 AAATGGGC 37586 || ||||| Sbjct 2946661 AAGTGGGC 2946654 Score = 194 bits (214), Expect = 4e-45 Identities = 367/532 (69%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 38737 TTGTTGTGGTTGGCCATCACTCTCGCTTAAGCCATGCGCAA--CGTCTTGCCGCGTTGCT 38794 |||| || || ||||| ||||| ||| | | ||| || | || || || | | ||| Sbjct 2945375 TTGTGGTTGTCGGCCACCACTCCCGCCGCAAC-ATG-GCTATGCGCCTGGCTGAATCGCT 2945318 Query 38795 GGATGCTCATCTGCTTATTGATGACGGTGACCACGGCGCGAACTGGAATCATCGGCGCGC 38854 ||||||||| |||||||||||||| | | | |||| |||||||||||||| || || || Sbjct 2945317 GGATGCTCACCTGCTTATTGATGAAGAGGGCAACGGGGCGAACTGGAATCACCGCCGTGC 2945258 Query 38855 TATCGAGTGGGCAGTTGAGCAGCCTTGCCGTGTAGTGGTATTGGAGGACGACGCGCTGCC 38914 |||| ||||||| ||||| |||| | || ||| | | || || || ||||| || Sbjct 2945257 CATCGCATGGGCAGGCCAGCAGGATTGCAGGGTGGTGATTGTTGAAGATGATGCGCTTCC 2945198 Query 38915 AGTACATGGATTCACCGAAAAGGTAACTGACTGGCTGGCTCGTTTCCCTGACGACATGCT 38974 || | ||| ||| | | || || ||| ||| | ||||||||| |||| || Sbjct 2945197 TGTTCCTGGCTTCGCGTCACTGGCTCAGGAATGGGTGGATAAATTCCCTGACAACAT-CT 2945139 Query 38975 GAGC-TTTTATCTCGGCACCGGCCGACCACCGCAGTATCAGAAAGAGATAGCCGACTGGC 39033 | | || || |||||||| || || || ||||| || |||| ||||||| | | | | Sbjct 2945138 GTTCGTTCTACCTCGGCACGGGACGCCCGCCGCAATACCAGATGCAGATAGCAGCCAGCC 2945079 Query 39034 TGATTGTTGCAGATAAGTCACGAGCAGACTTCATCACACTTCAGAGGCTGATACACGGGG 39093 | || | ||||| ||| | | |||| |||||| | | ||||| | ||||| | Sbjct 2945078 TCATCGAGGCAGACAAGCGGCAGTCCGACTACATCACGATGGATAGGCTTTTGCACGGCG 2945019 Query 39094 TCTGCTACAGCATCCCACC--TCAGCACCTGAACCGTGTTCTGTCTCGATGGCACAGCAG 39151 | ||||||||| ||||| | ||| | | || | ||| ||| |||||| Sbjct 2945018 TGTGCTACAGCCCTCCACCGAACGGCATCAGCAC--AATCCTGAAGAACTGGAACAGCAC 2944961 Query 39152 CAAGCCTGCTGATTATGCCGTTGGTGATGCCTATGGCGGCGCTGTGGTTTATCCGTGTTA 39211 || | || || ||||||||||||||||| |||| || || | |||||||| || Sbjct 2944960 TAAAGCCGCCGACTATGCCGTTGGTGATGCGCTTGGCCGCAAGGTCATCTATCCGTGCTA 2944901 Query 39212 CTCGCTGGTGGATCACGCCGACATGCAGACGGTTGAGCGTCATCCTGACAAC 39263 ||| |||||||| || ||||| | | |||||||||| || || |||||| Sbjct 2944900 CTCACTGGTGGACCATGCCGATGGCCTGCCGGTTGAGCGGCACCCCGACAAC 2944849 Score = 136 bits (150), Expect = 1e-27 Identities = 174/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 20427 TCAGAAACCAGCCATATGTCGGACTCTTCAAACATTTCTTCCAGCATGCGGTTTAGCTTT 20486 ||||| |||| ||| |||| || |||||||| ||||| | ||||| ||| | Sbjct 2402394 TCAGACACCATCCACTGATCGGCTTCCTCAAACATCTCTTCAATAATGCGTAACAGCGTG 2402335 Query 20487 TCCCGATCGCTTTTACTTGCATCGCTATTCAAGCCGTTCGCCTGCATCGGCTTCACCTTC 20546 | |||||||||||| || || || |||| |||||| ||||||||||| || ||||| Sbjct 2402334 GACTTATCGCTTTTACTGGCGTCACTTTTCACGCCGTTGGCCTGCATCGGTTTTACCTTG 2402275 Query 20547 ACTTCGGCATCAGGGAAAATCTGATGAACCCGCTTCGTCAGCTCGGCCAGAATGATCTCT 20606 || ||||| || || | | || || ||||| |||||||||||| || | || | Sbjct 2402274 ACCAGCGCATCGGGAAACACACGCTGCACGCGCTTTTCCAGCTCGGCCAGGATCAGCTGT 2402215 Query 20607 CTGGCCCCTTCG--AGCCCCGCAACATTACGCTTGTCATATACCAGTTCAACAAACAT 20662 ||| |||| || |||||||| || ||||||||||| | ||||||||||||||| Sbjct 2402214 TCGGCA--TTCGGCAGACCCGCAACGTTGCGCTTGTCATAAATCAGTTCAACAAACAT 2402159 Score = 105 bits (116), Expect = 2e-18 Identities = 168/236 (71%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 20434 CCAGCCATATGTCGGACTCTTCAAACATTTCTTCCAGCA-TGCGGTTTAGCTTTTCCCGA 20492 ||||||| || || | |||||||||||| || || | || || | |||||| || | Sbjct 2920107 CCAGCCACATATCAGCCTCTTCAAACATCTCCTCAATCACAGCAG-CCAGCTTTGCCTTA 2920049 Query 20493 TCGCTTTTACTTGCATCGCTATTCA---AGCCGTTCGCCTGCATCGGCTTCACCTTCACT 20549 |||| |||||| |||||| |||| | || ||| | ||||||||| |||||||| Sbjct 2920048 TCGCCTTTACTGGCATCGGTATTAATGCTGCTGTTAGTGACCATCGGCTTAACCTTCACC 2919989 Query 20550 TCGGCATCAGGGAAAATCTGATGAACCCGCTTCGTCAGCTCGGCCAGAATGATCTCTCTG 20609 || ||| | || || | | || || |||||| ||| || ||||| || | ||| ||| Sbjct 2919988 TCAGCAGCCGGAAACACACGGTGTACTCGCTTCTCCAGTTCAGCCAGGATCAGCTCCCTG 2919929 Query 20610 GCCCCTTC--GAGCCCCGCAACATTACGCTTGTCATATACCAGTTCAACAAACATT 20663 | | ||| || | || ||||| |||||||| || | |||||||| |||||| Sbjct 2919928 G--CGTTCGGGAATTCGGCCACATTGCGCTTGTCGTAAATGAGTTCAACGAACATT 2919875 Score = 86.0 bits (94), Expect = 2e-12 Identities = 105/142 (74%), Gaps = 15/142 (11%) Strand=Plus/Plus Query 21473 ACACGCGTGATTTAAAATCCCTCGGCGTTCGCGCTGTGTGGGTTCAAGTCCCACTCCGGG 21532 |||| | |||||||||||||||||| | | |||||||||||||||||||||| ||||| Sbjct 1292643 ACACAAGGGATTTAAAATCCCTCGGCTTATG-GCTGTGTGGGTTCAAGTCCCACCCCGGG 1292701 Query 21533 TACCATGGGAAAACTA-----------GAATAAAATCAA--TGATAAGCAGTGTCGTATA 21579 ||||| ||||| |||||||| ||| || |||||| ||||||| Sbjct 1292702 CACCATCTTCGAACTACCGATTAAAACGAATAAAAACAAGCTG-TAAGCAATGTCGTAAC 1292760 Query 21580 AACCACCGAAAGGTGGtttttt 21601 || | |||||| |||||||| Sbjct 1292761 CGCCCCTGAAAGGCGGTTTTTT 1292782 >seq3245 Length=6216 Score = 324 bits (358), Expect = 4e-84 Identities = 492/692 (71%), Gaps = 14/692 (2%) Strand=Plus/Minus Query 37496 ACGTGGTTATTACTACTCTGCTGACCAGCCAGCCTGACCCGCAGCGCGGTACGAAAATGA 37555 |||||||||| || || ||||||||||||||||||||||| ||||||||||| ||| ||| Sbjct 6215 ACGTGGTTATCACGACACTGCTGACCAGCCAGCCTGACCCACAGCGCGGTACCAAACTGA 6156 Query 37556 CCGCCTCTCCTGACATGCTGGCTAAATGGGCGTCCTCGCTTCGGAATTGTG--GACG-TA 37612 | | | |||||| ||||| || ||||| | || || || | | || | | Sbjct 6155 CTCCATTACCTGACCTGCTGAGCAAGTGGGCCGCGTCAATT---AAAGGCGCTGATGCTG 6099 Query 37613 TTGCGCTGGTGGATGAACTACAGACGGCACCGGCAGACGTTG--AGC-TGTATCGCGTTC 37669 ||| ||||| || ||||| | || |||||| ||| | | | | | || || | Sbjct 6098 TTGTGCTGGCTGACGAACTCCCTACAGCACCGA---ACGGGGCAACCATCCACCGGGTGC 6042 Query 37670 CTGACGTGAAGATGAATGTCTACTTCAGGCGCTGGCTGCATATCTGGCAGCACCTGCGAG 37729 |||| ||| |||||| ||||||||| |||||||||||||||| | ||| |||| || | Sbjct 6041 CTGATGTGGCGATGAACGTCTACTTCCGGCGCTGGCTGCATATTTACCAGTACCTTCGCG 5982 Query 37730 ATCACCCTGAATACCGGTTCGTCTGGTGTACTGATGGTACCGATGTCGAAATGCTTCGCG 37789 | || |||||||||||||||||||||||||| ||||| || || || || ||||| |||| Sbjct 5981 AGCATCCTGAATACCGGTTCGTCTGGTGTACCGATGGCACTGACGTGGAGATGCTGCGCG 5922 Query 37790 CGCCGTGGGAAGAAATGGAACCCGGTAAGGTGTATGTCGGTTCTGAACCGAAGACCTACG 37849 || |||| || ||||| || || ||||||||||||| || || |||||||||| Sbjct 5921 AACCATGGGCGGAGATGGAGCCTGGCCGACTGTATGTCGGTTCGGAGCCAAAGACCTACG 5862 Query 37850 CCGACTCCTGGGCGAAACAGAATCATCCTGAGCGTATCTATAAGGAATTCATTGAAGCGC 37909 | ||| | ||||| | ||||| || ||||| ||| || ||||||| || | Sbjct 5861 CTGACGCATGGGCCACTACCAATCACCCGGAGCGGCCTTATGCTGAGTTCATTGCCGCAC 5802 Query 37910 ACCGCGGCGATGTGATGCTGAACGCTGGTCTGCTGGGTGGCACCCGCGCTGATGTAATGG 37969 | || || ||||||| |||||||| ||||| |||||||| || | ||||| |||| Sbjct 5801 ATCGTAATGAGCTGATGCTTAACGCTGGCCTGCTCGGTGGCACACGTGAAGATGTGATGG 5742 Query 37970 CGTTCGCTCACGGCATCATCCGTCTTTACTACCGGATAGAGAGTTATCGTTTCTGGAAGA 38029 | | ||| || | ||| |||| | | || || | ||| | | |||||| | Sbjct 5741 CATACGCGCATGCGATCGTCCGCATCTGGTATCGTACCGAGTCAAACAGGTTCTGGGGCA 5682 Query 38030 AAGA-ACAGGCTGGCGCTGCGGTGGGCGATATGATCGCTTTTGGCATTGTTGCTAAATCG 38088 |||| | ||| || ||| ||||||||||||||||| || ||||| |||| | | | Sbjct 5681 AAGAGAAGGGCAAGCCATGC-GTGGGCGATATGATCGCATTCGGCATCGTTGGTTATCAG 5623 Query 38089 TTTGGCGATCGAATTGTCACCGGCCCCCGCATCCACACTATTTTTAAGTCCGATGGTGTC 38148 |||| | | || |||||||| || | || || | ||||| | ||||| || Sbjct 5622 CAGCGCGACAAACTGGTGACCGGCCCGCGAGTGCATACCGTGTTTAAAACTGATGGCGTG 5563 Query 38149 GGTAAAGAGTACGCTTTCTGGCGCCATAAATA 38180 |||||||||| ||| | ||| |||||||| Sbjct 5562 GGTAAAGAGTGCGCCTGGTGGAAGCATAAATA 5531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127961682381946