Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq1959 114 4e-21 seq122 93.3 1e-14 >seq1959 Length=43063 Score = 114 bits (126), Expect = 4e-21 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 44490 AGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGC 44549 ||| || |||||||| || | |||| || |||||||||| || ||||| |||||||| Sbjct 9606 AGATCTTAAGCTGGCTAAGTCAACAATCACCGACATGCAGACACGCCAGCGCGATGTTGC 9665 Query 44550 TGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCT 44609 ||| ||||| ||||| ||||| ||||||||||||||||||||||| || ||| |||| Sbjct 9666 TGCACTCGACGCAAAGTACACAAAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCT 9725 Query 44610 GCG 44612 || Sbjct 9726 CCG 9728 >seq122 Length=4874392 Score = 93.3 bits (102), Expect = 1e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 36056 ATAATGCCCTACCGCTCCTTGGGTGATACCCAGTTCATCAGCGATTGAGTATTGGGTTAT 36115 ||| ||||| || || | |||||| || || |||||||| || | || || || Sbjct 2985187 ATAGTGCCCAACAGCACTTTGGGTAATGTTCATCTCATCAGCAATGTGCTGCTGAGTAAT 2985128 Query 36116 TCCCAATTCTTTCTTTTTTGACTCATACAAAGCCTTAAGCCGCTTAGCGTCTTCGAGCTG 36175 || | | ||| || || |||||||||| ||| ||||| || || |||||||| ||||| Sbjct 2985127 ACCAAGATTTTTTTTCTTGGACTCATACAGAGCTTTAAGGCGTTTGGCGTCTTCAAGCTG 2985068 Query 36176 TTCTGTCGTCAGTGATTTTTTATTTTCCATAGCTTAATTCTAATAGCT 36223 |||||||||||| ||| | ||| ||||| || ||| ||||| || Sbjct 2985067 TTCTGTCGTCAGGAGCTTTGTCGTTTTCATAG-TTTATTTTAATACCT 2985021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150555201906312