Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq302 185 2e-42 seq122 118 3e-22 seq154 89.7 1e-13 seq1959 82.4 2e-11 >seq302 Length=239003 Score = 185 bits (204), Expect = 2e-42 Identities = 279/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 24448 CTGATGTTTATGCTCGTCTGTATCTGCATCTTTCGCATCATCAATGCCGAATAAACCATT 24507 ||| || | | |||| ||||| || ||||| || | |||||||| | || | | |||| Sbjct 149601 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 149660 Query 24508 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCCGTAACTTGTGCAGAATCCATTCC 24567 || |||||||| | |||||| || || || || || ||||| || || || |||||||| Sbjct 149661 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 149720 Query 24568 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGACTGTT--TTCGCCATCG 24625 |||||||| || || || | ||| | || | |||||||| |||| ||| || || Sbjct 149721 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 149778 Query 24626 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 24685 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 149779 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 149838 Query 24686 ATTGATAAAAACAGGCCATTCAGTAACGGCTTAACACCCTCAAGAATGTCTTCGCAGCTT 24745 || | || || || || || | || ||||| ||||| | ||| ||||| ||| | Sbjct 149839 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 149898 Query 24746 CTGTATTTATATTTGCCGAATGAGTTATATTGATTCTTTGGCGCGTTCAGATTCTCCTGA 24805 | |||||||| || ||||| ||| || || |||||||| ||||| || | |||| Sbjct 149899 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 149958 Query 24806 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 24840 || |||| || |||||||||||||||| ||||| Sbjct 149959 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 149993 >seq122 Length=4874392 Score = 118 bits (130), Expect = 3e-22 Identities = 395/601 (66%), Gaps = 33/601 (5%) Strand=Plus/Minus Query 21995 GAACTGGCTAAGATTTGGCTTGCTATTGAAAGAAGCCGTGCGTCTACGTCAAATAAGCTC 22054 || ||||| || | ||||| || | |||| | | | || | | || || ||||| Sbjct 2987293 GAGCTGGCGAAAGTGTGGCTGGCGCTGGAAAATAACAAGGTGTTTTCATCTAACAAGCTG 2987234 Query 22055 CTTCATCAGATGCTTATGCTGTGGGGGTCGAGGCTCTCAGAGCTTAGGCTGGCAACAAAG 22114 || ||||||||||| |||||||||| | || | ||||| ||| |||| |||| Sbjct 2987233 CTGCATCAGATGCTGCTGCTGTGGGGAGCCAGATTGTCAGAACTTCGGCTCTCAACCCCT 2987174 Query 22115 ACAGAATTTGAC-CTGCTGGACAACGTATGGACCGTACCGAAAGAGCATAGCAAGATGGG 22173 | || || || ||| | || | ||||||| ||| | ||| |||||||| Sbjct 2987173 GCTGAGTTCAACACTGAAG-ACTTCATATGGACTACACCTGTCGCCCATTCGAAGATGGG 2987115 Query 22174 TAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTTCTCGAAAAG------GC 22227 |||||||||||||| || || || || || || ||||| | | | |||| | || Sbjct 2987114 GAATGTTATCCGCCGCCCTATATTTGAGCAGATGAAGCCATATGTTGAAAGGCTACTTGC 2987055 Query 22228 CATGACAACATACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGATCAGCAT 22287 |||| ||| | | |||||| || ||| | || | ||||| ||||| | Sbjct 2987054 GATGAAAACCC-CGGTAATGTTC-----CCCGGACAGGAACTGGACAAAGCGATCGAC-- 2987003 Query 22288 CGCTGCAGC-CAACCGATTCGTAAATAGAATAA---GGGGAGG--GATGGACATAGGTTA 22341 || | | | ||| || ||| || ||| || | | | | ||| || || | Sbjct 2987002 CGATCCTCCGCAA---ATCTGTACAT-GAAAAACCTGCGCACGAAGATAGATATCCCCGA 2986947 Query 22342 CTGGCGAACACATGATTTCAGAAGAACGCTTGTTACACGGCTGTCCGAGATGAATGT--C 22399 ||||| || ||||||||||| | | || ||||| | || || ||| || | Sbjct 2986946 ATGGCGCACTCATGATTTCAGGCGCTCACTGGTTACCAACTTATC--AGGCGAAGGTATC 2986889 Query 22400 GAGCCCCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTGTAC 22459 |||||| || || || ||||| || ||||| || |||||| ||||| | || || Sbjct 2986888 ATGCCCCACGTCACCGAAAAGATGCTGGGGCATGAGCTGGGCGGGGTAATGGCGGTTTAT 2986829 Query 22460 AATAAACACGACTGGATAGAGGCTCAGCGCAAAGCGTATGAGCTTCACGCTGATAAATTG 22519 || ||||| |||||| | |||| ||||||||||| ||||||||| ||||||||||| | Sbjct 2986828 AACAAACATGACTGGCTTGAGGAGCAGCGCAAAGCCTATGAGCTTTACGCTGATAAAGTC 2986769 Query 22520 TTCTGGCACATCAGGAACATTTCTGGTTAACGCCACCGTTAAGAATCCACCCTTCAACAG 22579 | |||||| | | |||| || |||| || || || | | | |||| || ||||| Sbjct 2986768 CTGTGGCACGTTA--AACAGCTC-GGTTGACACCGCCATCATCTACCCACTTTTTAACAG 2986712 Query 22580 C 22580 | Sbjct 2986711 C 2986711 >seq154 Length=560718 Score = 89.7 bits (98), Expect = 1e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 32086 ATTGCTCACATCTCAGGAAGCCTGAAGGCGATGGCGAAAGACCTGAAAACGCCTGTTATC 32145 |||||| | |||||| || |||| || |||||||||| ||||| || || || Sbjct 275575 ATTGCTGAGATCTCACGATCTTTGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTC 275516 Query 32146 TCCCTGAGTCAGCTTTCACGCGATGTTGAGAAGCGACCAAACAAACGCCCGACAAACGCA 32205 || | |||||| ||| | ||| |||| || | ||||| || ||| || Sbjct 275515 GCCTTATCACAGCTTAACCGCTCATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCA 275456 Query 32206 GATTTGCGTGATTCAGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGG 32265 ||||||||||| |||||| ||||| ||||| || |||| ||||| | ||||||| Sbjct 275455 GATTTGCGTGAGTCAGGATCGATTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGT 275396 Query 32266 GAAGCGGTATATGACGAGAACAGT 32289 || | ||| ||| |||| |||||| Sbjct 275395 GACGAGGTGTATCACGAAAACAGT 275372 >seq1959 Length=43063 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 37834 ATCGCTGATATGCAGAAGCGTCAACGTGATGTAGCAGAACTCGACGCCAGATACACAAAG 37893 ||| | || ||||||| || || || ||||| || | ||||||||| | ||||||||| Sbjct 9631 ATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACAAAG 9690 Query 37894 GAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37953 ||| | ||||||||||| || | || ||| |||||| || |||| || ||| || Sbjct 9691 GAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGCCGC 9750 Query 37954 AAGCG 37958 ||||| Sbjct 9751 AAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128364852394702