Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019769.1 Length=38964 Score E Sequences producing significant alignments: (Bits) Value seq122 497 3e-136 seq3245 338 2e-88 seq302 194 4e-45 >seq122 Length=4874392 Score = 497 bits (550), Expect = 3e-136 Identities = 552/733 (75%), Gaps = 10/733 (1%) Strand=Plus/Minus Query 36346 CCGGCGCGCTGGTGGTTGTTATCGATGATGGTTCA---AAACCTGCAACGGAAGTTACCG 36402 |||| |||||||||||||||||||||||||||||| || |||| |||| | | | Sbjct 2947380 CCGGTGCGCTGGTGGTTGTTATCGATGATGGTTCAGCAAAGCCTGTTACGG---TCCCTG 2947324 Query 36403 ACGGCGTGCAGCTGCTTCGCAATGAAACATCACTCGGCATTGTTGCTTCGAAGAACGCCA 36462 | || || | |||| ||||| ||| | |||| |||||||||||| ||||||||||||| Sbjct 2947323 ATGGTGTACGGCTGATTCGCTGTGACATGTCACGCGGCATTGTTGCATCGAAGAACGCCA 2947264 Query 36463 GCCTGTCTGCCCTGATGGATGCCGGGTGCGAGCACCTGTTTTTATGGGATGACGACGCCT 36522 |||| || |||| ||||| || || ||||| |||||||| ||||| || ||||| | Sbjct 2947263 GCCTCGAGGCTTTGATTGATGCTGGATGTGAGCATCTGTTTTTGTGGGACGATGACGCAT 2947204 Query 36523 GGCCTATCGCCGACAACTGGCACCTGCCGTATATCGAATCTCCAGAGCCGCACCTGGCTT 36582 ||||||| || | ||| | | ||| || ||||| || || ||||||||||| |||| Sbjct 2947203 GGCCTATAGCTGGTGGATGGGAACAGCCTTACATCGATTCACCCGAGCCGCACCTCGCTT 2947144 Query 36583 ATCAGTTTCTCGATCTGGCTGGCCCGCGAAAGATTAACGATATGACCGTTCTGTACCGGG 36642 | ||||| || || ||||||||||| || ||| |||| || | |||| ||||||| || Sbjct 2947143 ACCAGTTCCTTGACCTGGCTGGCCCACGTAAGCTTAAAGACCTCGCCGTACTGTACCAGG 2947084 Query 36643 ATGATAAGCATATTGCTTACACTGGGCAGCGCGGAGTGATGTTGTACTACCACCGCAGCG 36702 | |||||||| || |||||||| || ||||| || |||||| | |||||||||||| | Sbjct 2947083 ACGATAAGCACATCGCTTACACCGGACAGCGAGGCGTGATGCTTTACTACCACCGCTCAG 2947024 Query 36703 CCATCGAGAAGGTGGGCGGGTTCGATCCGGTGTATGGCCGGGGCATGTATGAGCATCCTG 36762 | || |||||||| ||||| ||||| ||||| || || || |||||||| || || ||| Sbjct 2947023 CGATTGAGAAGGTTGGCGGCTTCGACCCGGTTTACGGGCGCGGCATGTACGAACACTCTG 2946964 Query 36763 ATCTGGCGCTTCGGATTTATAACGCTGGCTTAACGTCCTGGGCGTTTGCTGATGTGGTTG 36822 | |||||||| || ||| ||||||| || ||||| ||||||||| ||||| || | || Sbjct 2946963 ACCTGGCGCTACGCATTCATAACGCCGGGTTAACCAGCTGGGCGTTCGCTGACGTTGCTG 2946904 Query 36823 GCTCTGAAAAGCTGATTCATTCGATGGATGAATACGAA--GAAGGCGCGCGCAGTATACC 36880 |||| |||||||||||| | ||| |||| ||| | ||| | || || ||| |||| Sbjct 2946903 GCTCCGAAAAGCTGATTTACTCGCTGGACGAACATGAAGCGGTGGACCGTTCAG--TACC 2946846 Query 36881 GAGGCCAGAACGTGAAGCGCTCGATAAAAAGAACGCTGTGATTTACGGGCAGCGCAGGGA 36940 || ||| || ||||||||||| | ||| |||| |||| | ||||| | || Sbjct 2946845 GAAGCCTGACCGTGAAGCGCTGGTTAAGCGCAACGTGACGATTCATAACGAGCGCCGAGA 2946786 Query 36941 TTCAGGATATACAGGCTATGCCGAGTATCGATCTCAGCGTGACGTGGTCATCACTACGTT 37000 ||||| | || ||||| ||||||||| ||||| ||||||| ||||| || | Sbjct 2946785 CAGCGGATACGCCGGATATGCTGAGTATCGAAGCCAGCGCAACGTGGTTATCACGACACT 2946726 Query 37001 ACTAACCAGCCAGCCAGACCCGCAGCGCGGTACGAAAATGGCCGCCTCACCTGACATGCT 37060 || ||||||||||| ||||| ||||||||||| ||| || | | | | ||||| |||| Sbjct 2946725 GCTGACCAGCCAGCCTGACCCACAGCGCGGTACCAAACTGACTCCATTATCTGACCTGCT 2946666 Query 37061 GGCTAAATGGGCC 37073 | || |||||| Sbjct 2946665 GAGAAAGTGGGCC 2946653 Score = 149 bits (164), Expect = 2e-31 Identities = 330/481 (69%), Gaps = 18/481 (4%) Strand=Plus/Minus Query 37726 GCTGGATGCTCATCTGCTTATTGATGAAGGTAACCGCGGCGCTAACTGGAATCATCGTCG 37785 |||||||||||| |||||||||||||||| | ||| || ||||||||||| || || Sbjct 2945320 GCTGGATGCTCACCTGCTTATTGATGAAGAGGGCAACGGGGCGAACTGGAATCACCGCCG 2945261 Query 37786 CGCTATCGAATGGGCTGCTGAGCAACCTTGCCGGGTAGT-AGTGTTGGAAGACGACGCGC 37844 || |||| |||||| | |||| |||| |||| || | ||||| |||| || |||| Sbjct 2945260 TGCCATCGCATGGGCAGGCCAGCAGGATTGCAGGGTGGTGATTGTTG-AAGATGATGCGC 2945202 Query 37845 TTCCTGTGCAGGGCTTCACCGATAAGGTAACTGACTGGCTGGTGCGCTTCCCTGACGACA 37904 ||||||| | |||||| | || || ||| ||| ||||||||| ||| Sbjct 2945201 TTCCTGTTCCTGGCTTCGCGTCACTGGCTCAGGAATGGGTGGATAAATTCCCTGACAACA 2945142 Query 37905 TGCTGAGC-TTTTATCTCGGTACTGGCCGACCGCCGCAGTATCAGAAAGAGATTGCCGGA 37963 | ||| | || || ||||| || || || |||||||| || |||| |||| || | Sbjct 2945141 T-CTGTTCGTTCTACCTCGGCACGGGACGCCCGCCGCAATACCAGATGCAGATAGCAGCC 2945083 Query 37964 ATGCTGGTGGATGCGGA-TCGCGTCTGTGGTGACCACATCGTATTAAGCAAA--CTGATT 38020 | || | || || || ||| | || ||| ||||| | | | | | || | Sbjct 2945082 AGCCTCATCGAGGCAGACAAGCGGCAGT-CCGACTACATC--ACGATGGATAGGCTTTTG 2945026 Query 38021 CACGGCGTATGTTACAGCCCTCCTCAGGGCAGGCTGGGGCGC-ATGCTCAGCACCTGGAA 38079 |||||||| || ||||||||||| | | | ||| || | || || | | |||||| Sbjct 2945025 CACGGCGTGTGCTACAGCCCTCCACCGAAC-GGCATCAGCACAATCCTGAAGAACTGGAA 2944967 Query 38080 TAAAACGCTGGCAGCTGATTACGCCGTCGGTGAGGCATTCGGTGGCCGGGTGATTTATCC 38139 | || || || || || ||||| ||||| || | || || ||| || ||||| Sbjct 2944966 CAGCACTAAAGCCGCCGACTATGCCGTTGGTGATGCGCTTGGCCGCAAGGTCATCTATCC 2944907 Query 38140 GTGTTACTCGCTGGTGGATCACGCCGA---CATGCCGACAGTTGAGCGTCACCCTGACAA 38196 ||| ||||| |||||||| || ||||| | ||||| |||||||| ||||| ||||| Sbjct 2944906 GTGCTACTCACTGGTGGACCATGCCGATGGCCTGCCG---GTTGAGCGGCACCCCGACAA 2944850 Query 38197 C 38197 | Sbjct 2944849 C 2944849 >seq3245 Length=6216 Score = 338 bits (374), Expect = 2e-88 Identities = 497/691 (72%), Gaps = 18/691 (3%) Strand=Plus/Minus Query 36982 ACGTGGTCATCACTACGTTACTAACCAGCCAGCCAGACCCGCAGCGCGGTACGAAAATGG 37041 ||||||| ||||| || | || ||||||||||| ||||| ||||||||||| ||| || Sbjct 6215 ACGTGGTTATCACGACACTGCTGACCAGCCAGCCTGACCCACAGCGCGGTACCAAACTGA 6156 Query 37042 CCGCCTCACCTGACATGCTGGCTAAATGGGCCTCATCGCTCC--GGAATTGTGGCCGTAT 37099 | | | ||||||| ||||| || |||||| | || | || || || || Sbjct 6155 CTCCATTACCTGACCTGCTGAGCAAGTGGGCCGCGTCAATTAAAGGCGCTGATGCTGTT- 6097 Query 37100 CGCGCTGGTGGATGAACTACAGACGGCACCGGCAGACGTTG--AGC-TGTACCGCGTTCC 37156 | ||||| || ||||| | || |||||| ||| | | | | |||| || || Sbjct 6096 -GTGCTGGCTGACGAACTCCCTACAGCACCGA---ACGGGGCAACCATCCACCGGGTGCC 6041 Query 37157 TGACGTGAAGATGAATGTCTACTTCCGGCGCTGGCTGCATATCTGGCAGCACCTGCGCGA 37216 ||| ||| |||||| |||||||||||||||||||||||||| | ||| |||| ||||| Sbjct 6040 TGATGTGGCGATGAACGTCTACTTCCGGCGCTGGCTGCATATTTACCAGTACCTTCGCGA 5981 Query 37217 TCACCCTGAATATCGGTTCGTCTGGTGTACCGATGGTACCGACGTCGAAATGCTTCGCGC 37276 || |||||||| ||||||||||||||||||||||| || ||||| || ||||| |||| Sbjct 5980 GCATCCTGAATACCGGTTCGTCTGGTGTACCGATGGCACTGACGTGGAGATGCTGCGCGA 5921 Query 37277 GCCGTGGGAAGAAATGCAGCCCGG--GACTGTTTACGTCGGTTCTGAACCGAAGACCTAC 37334 || |||| || ||| |||| || |||||| | |||||||| || || ||||||||| Sbjct 5920 ACCATGGGCGGAGATGGAGCCTGGCCGACTGTAT--GTCGGTTCGGAGCCAAAGACCTAC 5863 Query 37335 GCCGACACCTGGGCGAAACAGAATCATCCTGAGCGTATCTATCAGGAATTCATTGAAGCG 37394 || ||| | ||||| | ||||| || ||||| ||| || ||||||| || Sbjct 5862 GCTGACGCATGGGCCACTACCAATCACCCGGAGCGGCCTTATGCTGAGTTCATTGCCGCA 5803 Query 37395 CACCGCAACGATGTGATGCTTAACGCTGGTCTGCTGGGTGGCAGCCGCGCTGATGTAATG 37454 || || || || |||||||||||||||| ||||| ||||||| || | ||||| ||| Sbjct 5802 CATCGTAATGAGCTGATGCTTAACGCTGGCCTGCTCGGTGGCACACGTGAAGATGTGATG 5743 Query 37455 GCGTTCGCTCACGGCATCATCCGTCTTTACTACCGGATCGAGAGTTATCGTTTCTGGAAG 37514 || | ||| || | ||| |||| | | || || | |||| | | |||||| Sbjct 5742 GCATACGCGCATGCGATCGTCCGCATCTGGTATCGTACCGAGTCAAACAGGTTCTGGGGC 5683 Query 37515 AAAGA-ACAGGCTGGCGCCGCGGTGGGTGACATGCTGGCATTCGGTATTGTCGCGCAGTC 37573 ||||| | ||| || || ||||| || ||| | |||||||| || || | | || Sbjct 5682 AAAGAGAAGGGCAAGCCATGC-GTGGGCGATATGATCGCATTCGGCATCGTTG-GTTATC 5625 Query 37574 ATTCGC-TGACAGACTGGTCACCGGCCCTCTGGTACATACCGTTTTCAAAACTGATGGTA 37632 | || |||| |||||| |||||||| | || |||||||| || ||||||||||| Sbjct 5624 AGCAGCGCGACAAACTGGTGACCGGCCCGCGAGTGCATACCGTGTTTAAAACTGATGGCG 5565 Query 37633 TCGGTAAGGAGGCCGCATGGTGGAAACACAA 37663 | ||||| ||| ||| |||||||| || || Sbjct 5564 TGGGTAAAGAGTGCGCCTGGTGGAAGCATAA 5534 >seq302 Length=239003 Score = 194 bits (214), Expect = 4e-45 Identities = 281/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 23628 CTGATGTTTATGCTCGTCGGTATCTGCATCTTTCGCATCATCAATGCCGAATAAACCATT 23687 ||| || | | |||| || || || ||||| || | |||||||| | || | | |||| Sbjct 149601 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 149660 Query 23688 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCAGTAACTTGTGCAGAATCCATTCC 23747 || |||||||| | |||||| || || || || |||||||| || || || |||||||| Sbjct 149661 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 149720 Query 23748 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGACTGTT--TTCGCCATCG 23805 |||||||| || || || | ||| | || | |||||||| |||| ||| || || Sbjct 149721 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 149778 Query 23806 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 23865 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 149779 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 149838 Query 23866 ATTGATAAAAACAGGCCATTCAGTAACGGCTTAACGCCTTCAAGAATGTCTTCGCAGCTT 23925 || | || || || || || | || ||||| || || | ||| ||||| ||| | Sbjct 149839 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 149898 Query 23926 CTGTATTTATATTTACCGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTCCTGA 23985 | |||||||| |||||||| ||||||||| |||||||| ||||| || | |||| Sbjct 149899 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 149958 Query 23986 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 24020 || |||| || |||||||||||||||| ||||| Sbjct 149959 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 149993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124553935845556