Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq83 168 7e-37 seq122 134 1e-26 seq1959 98.7 1e-15 >seq83 Length=912621 Score = 168 bits (186), Expect = 7e-37 Identities = 340/497 (68%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 146509 GGACTGAACAACGTGATGTAATCGTTTTTAATCAATCGTTCAATCATGAGGTCGTTAATT 146568 |||||||| | || ||| | || ||| | || |||| | |||||| | ||| ||| Sbjct 580233 GGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGATT 580174 Query 146569 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 146628 || || || ||||||||||| || | |||||| | |||||||| || || ||||| Sbjct 580173 TGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGG 580114 Query 146629 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGCTGCACCGCCA 146688 || | | | |||| | ||| | ||||| || || ||| ||| || || ||||| || Sbjct 580113 ACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCG 580054 Query 146689 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 146745 || | ||||||||| || |||||||| || | | || ||||| ||| |||| || Sbjct 580053 CGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTG---TTTGTAGAACGGG 579997 Query 146746 ATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACG-ATACAT 146804 ||| || ||||| | |||||||| | | || ||| ||||| |||| Sbjct 579996 ATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATAC-G 579938 Query 146805 TCCAGCATTAACACCAATACCGGCACGTTTGCTGATA--TATTTGATGATTGCTTTGTTT 146862 |||||||| | ||| || || || |||| ||| | ||||| | ||| || | Sbjct 579937 GCCAGCATTGATACCGATCCCTGCGCGTT--GTGAAACGTATTTAACGATAGCACTAGAA 579880 Query 146863 ACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGAACTGG 146922 ||||| ||| ||| | |||||||||| || |||| ||||| || ||||| ||| Sbjct 579879 GTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGG 579820 Query 146923 CGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTTTAGAT 146982 |||||||| || ||||| || ||||| ||||| ||||| | ||||| | | | || Sbjct 579819 CGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGAC 579760 Query 146983 ACGGCATTATAGAAACG 146999 ||||||| ||| || || Sbjct 579759 ACGGCATCATAAAAGCG 579743 >seq122 Length=4874392 Score = 134 bits (148), Expect = 1e-26 Identities = 309/457 (68%), Gaps = 20/457 (4%) Strand=Plus/Minus Query 146553 CATGAGGTCGTTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACC 146612 ||| || | ||| | || || || || || | || || | ||||| | ||||| || Sbjct 2806287 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 2806228 Query 146613 TTTATTGTTCTTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAA 146672 ||||||||||| || |||||| |||| ||||| |||||||| || || || ||| Sbjct 2806227 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 2806168 Query 146673 AGTAGCTGCACCGCCACGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTG 146729 || ||||||||||| || | |||||| ||||| || || || || | | || ||||| Sbjct 2806167 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 2806108 Query 146730 AGTTTTCCAGAATGGAATAACGCCTGTATGACGAA--CTTCACCAGCGCCAATCTTAGAA 146787 || |||| ||||| ||| || || ||| ||||||| ||| ||| Sbjct 2806107 ---CTTATAGAACGGAATGCAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTG 2806053 Query 146788 CCTTCAGCAC-GATACATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATA----T 146842 || |||| ||| | || || |||| || |||||||||| ||||| | | Sbjct 2806052 CCCAGCGCACGGATGC-GACCGGCGTTAATGCCGATACCGGCAC----GCTGAGAAACGT 2805998 Query 146843 ATTTGATGATTGCTTTGTTTACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAA 146902 | || | || || || |||||||| ||||| || ||||| | ||||| | Sbjct 2805997 ACTTCACAATCGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCA 2805938 Query 146903 CAACGCAAGAACTGAACTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCA 146962 ||||| || ||||||||||| ||||| || || || |||| ||||||||| || |||| Sbjct 2805937 GTACGCAGGAGCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCA 2805878 Query 146963 GAGAAATCTGACGTTTAGATACGGCATTATAGAAACG 146999 | ||||||| | | || | |||| |||||||| Sbjct 2805877 GCGAAATCTTAAAGGTGGAGATCGCATCGTAGAAACG 2805841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 74898 AATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCT 74957 ||| ||||||||| ||||| ||||||||| |||||| ||||||||||||| |||||| Sbjct 217168 AATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCT 217227 Query 74958 AACCATCTGAGCTAAAGGGCCT 74979 ||||| |||||||| |||||| Sbjct 217228 AACCAACTGAGCTATGGGGCCT 217249 >seq1959 Length=43063 Score = 98.7 bits (108), Expect = 1e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 74900 TTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAA 74959 ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 8189 TTTGGTGACCCTTACTGGATTTGAACCAGTGACCTGGCGATTATGAGTCGCAAGCTCTAA 8130 Query 74960 CCATCTGAGCTAAAGGGCC 74978 || ||||||||||||||| Sbjct 8129 CC-GCTGAGCTAAAGGGCC 8112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540018519990120