Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019910.1 Length=159624 Score E Sequences producing significant alignments: (Bits) Value seq122 143 3e-29 seq83 95.1 1e-14 >seq122 Length=4874392 Score = 143 bits (158), Expect = 3e-29 Identities = 220/311 (71%), Gaps = 7/311 (2%) Strand=Plus/Minus Query 44931 CTGTGGGAGATCTTTGGCGGTAC--TCAAACTGAAACTGGCCACTTCCTGTTGGACGAAC 44988 |||||||||||||| ||||| || |||| || | ||| || || ||||| | Sbjct 3983543 CTGTGGGAGATCTTCGGCGGCACGGTCAA--TGCCAGGGGCTACAAGGTGCTGGACCCGC 3983486 Query 44989 ACATCGGTCTGATCTACGGTGACTCCATCACCCTGGCACGTGAAGACCAGATCTTTAGCC 45048 || | |||||||||||||| ||||| || ||||| | |||| | |||||| | || | Sbjct 3983485 ACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGCGTGCCAATCAGATCCTGAGTC 3983426 Query 45049 GTCTGGCTGACCGGAACTTCGCTTCCATCAACGTGGTGTTCGGTATCGGTTCCTACACCT 45108 |||||| | | ||| || || ||| ||||||||||| |||| || || || | Sbjct 3983425 GTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTGTTCGGCGTCGGGTCTTATACGT 3983366 Query 45109 ACCAGATGAACACCCGTGACAGTACTGGCACGGCGGTGAAAGCAACGGCTGGTAAGGTGA 45168 ||||| ||||| ||||||| ||| || ||||||| ||| ||| | ||| Sbjct 3983365 ACCAGTACAACACGCGTGACACCTTTGGTTTCGCCATGAAAGCGACGTATGGCGAAGTGC 3983306 Query 45169 ACGGTGAATTCCGTGAGATCTTCAAAGAGCCGAAGACCGATAAAGGCGGGACTAAAAAGT 45228 |||| || ||||||||||||||| ||||||| ||||| || ||| | ||||| | Sbjct 3983305 ACGGAGAGGGGCGTGAGATCTTCAAACAGCCGAAAACCGACAA---CGGCATGAAAAACT 3983249 Query 45229 CTGCGCGTGGT 45239 ||||||| ||| Sbjct 3983248 CTGCGCGCGGT 3983238 >seq83 Length=912621 Score = 95.1 bits (104), Expect = 1e-14 Identities = 240/365 (66%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 73416 CCCACCCCGATTATGGCAGGTGTTCGTACTCCTACCCGTCAGTTCAGTTCCTGTGTCCTG 73475 || || || || ||||| || || || || || || || || ||||| || || || || Sbjct 579782 CCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTT 579841 Query 73476 ATCAAAACTGGTGACACCCTGGACTCTATCAACGCAACGGCCAAGACCATCGTTGACTAT 73535 ||| | ||| || | | | |||||||||||||| || | | | |||||| | || Sbjct 579842 ATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATAC 579901 Query 73536 GTGTCCAAACGCGCAGGTATCGGCTTCGACGTCGGGGCTATCCGTGGGATTGGCAGTCCT 73595 || || |||||||||| ||||| || | | || ||| |||| | | ||||| || Sbjct 579902 GTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCA 579961 Query 73596 ATTCGCGGCGGAGAGATGGTTCACACAGGCCTGATCCCATTCATCAAGTATCTCACTGGG 73655 || || || || || | || || || ||||| ||| ||| | || | Sbjct 579962 ATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACG 580021 Query 73656 GCGCTCAAGTCGTGCTCCCAGGGCGGCATTCGTGGTGGTGCGGCAACAGCGTACATCCCT 73715 || | || || ||||| || |||||| | || || ||||| || ||| || |||| Sbjct 580022 GCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCT 580081 Query 73716 CTGTGGCATTACCAGTTCGATGACGTCGTTGTACTGAAGAATAACCGTGGTACTGAAGAG 73775 ||||||| | | | || | | | || ||||| |||||||||||| ||||| Sbjct 580082 ATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGT 580141 Query 73776 AACCG 73780 ||||| Sbjct 580142 AACCG 580146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510628821016320