Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019925.1 Length=152427 Score E Sequences producing significant alignments: (Bits) Value seq122 136 4e-27 seq83 120 3e-22 >seq122 Length=4874392 Score = 136 bits (150), Expect = 4e-27 Identities = 286/424 (67%), Gaps = 2/424 (0%) Strand=Plus/Minus Query 51379 CAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATGCGACGTTCGCGGTT 51438 |||||||| | |||||| ||| | ||| | |||||||| || |||| ||||||| Sbjct 2806299 CAGGCGCTGATACATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTT 2806240 Query 51439 CTCTTCTGTTCCACGGTTGTTCTTCAGGACAACGACGTCATCGAACTGGTAG-TGCCACA 51497 |||| || |||||||||||||| || | | | || | || || ||||||| Sbjct 2806239 GCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGCAGGCTTTCCA-CTTCCAGATGCCACA 2806181 Query 51498 GGGGGATGTACCCTGTCGCTGCACCGCCGCGAATGCCGCCCTGAGAGCACGACTTGAGCG 51557 ||| | || ||||||||||||||||| | ||||||||||||||| ||||| | || Sbjct 2806180 TTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCG 2806121 Query 51558 CCCCAGTGAGATACTTGATGAACGGGATCAGGCCTGTGTGAACCATCTCTCCGCCGCGAA 51617 | || | ||| |||||| || ||| ||||| | || |||||||| | Sbjct 2806120 CGGTCTGGAAGTGCTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGA 2806061 Query 51618 TAGGACTACCAATACCACGGATTGCCCCGAAGTCGAAACCGATACCAGCGCGTTTTGACA 51677 | || || || | ||||||| ||| || | |||||||| || || | || | Sbjct 2806060 TCGGGCTGCCCAGCGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAA 2806001 Query 51678 CATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGTCTTGA 51737 | || | || || | ||| || ||||| || || || ||| |||| || || | Sbjct 2806000 CGTACTTCACAATCGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAA 2805941 Query 51738 TCAACACACATGAGCTGAACTGACGGGTAGGAGTACGAACACCGGCCATGATCGGGGTTG 51797 ||| || || ||||||||||| || || || || || || |||| ||| || || || | Sbjct 2805940 TCAGTACGCAGGAGCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCG 2805881 Query 51798 GAAG 51801 | || Sbjct 2805880 GCAG 2805877 >seq83 Length=912621 Score = 120 bits (132), Expect = 3e-22 Identities = 282/423 (67%), Gaps = 2/423 (0%) Strand=Plus/Minus Query 51377 ACCAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATGCGACGTTCGCGG 51436 ||||| || | | |||| | |||||| || | ||||| || | | |||| | ||| Sbjct 580203 ACCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGG 580144 Query 51437 TTCTCTTCTGTTCCACGGTTGTTCTTCAGGACAACGACGTCATCGAACTGGTAGTGCCAC 51496 || |||| |||||||| || |||||||| | | | || | | |||||||| Sbjct 580143 TTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCAC 580084 Query 51497 AGGGGGATGTACCCTGTCGCTGCACCGCCGCGAATGCCGCCCTGAGAGCACGACTTGAGC 51556 | ||| || |||||| ||||| ||||| | |||||| || ||||| || || | Sbjct 580083 ATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACG 580024 Query 51557 GCCCCAGTGAGATACTTGATGAACGGGATCAGGCCTGTGTGAACCATCTCTCCGCCGCGA 51616 ||| || | ||| ||||||||| || || || | || || || || Sbjct 580023 GCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGG 579964 Query 51617 ATAGGACTACCAATACCACGGATT-GCCCCGAAGTCGAAACCGATACCAGCGCGTTTTGA 51675 || || || || | |||| || | || | | | || |||||| || ||||||| ||| Sbjct 579963 ATTGGGCTGCCTAGCGCACGAATACGGCCAGCATT-GATACCGATCCCTGCGCGTTGTGA 579905 Query 51676 CACATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGTCTT 51735 || || | |||||| | | | || |||||||||||||| | | | || ||| || Sbjct 579904 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTC 579845 Query 51736 GATCAACACACATGAGCTGAACTGACGGGTAGGAGTACGAACACCGGCCATGATCGGGGT 51795 ||| | ||| ||||||||||| || || || || || || || || |||||||| || || Sbjct 579844 GATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGT 579785 Query 51796 TGG 51798 || Sbjct 579784 AGG 579782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487600224008760