Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq122 473 4e-129 seq3245 221 4e-53 >seq122 Length=4874392 Score = 473 bits (524), Expect = 4e-129 Identities = 571/773 (74%), Gaps = 8/773 (1%) Strand=Plus/Minus Query 40168 ATTGGTATTGCCATCACCACTCACAACCGGCCCGATGTACTGGCGCGCGCACTTGAGCAG 40227 ||||| |||||| | ||||| || || || | | || |||| || || ||||| Sbjct 2947459 ATTGGAATTGCCGTGACCACCCATAATCGTCAGGCAGTGCTGGATAAAGCGCTGGAGCAT 2947400 Query 40228 CACCAGAAGCATCTACCACCCGGAGCGGTGGTCGTGATTGTCGATGATGGCTCGGT---G 40284 || | || |||| ||||| ||| |||| || || |||||||||| || | | Sbjct 2947399 CAGCTCCGTTATTTACCGCCCGGTGCGCTGGTGGTTGTTATCGATGATGGTTCAGCAAAG 2947340 Query 40285 CCTGCTGCCGTAGCACAAGAATCTGCACGGCTCATCCGGCATGAGCAATCACAGGGTATC 40344 |||| | | || | | | || |||||| || || ||| |||| || || Sbjct 2947339 CCTGTTACGGTCCCTGATGG---TGTACGGCTGATTCGCTGTGACATGTCACGCGGCATT 2947283 Query 40345 GTGGCATCTAAAAACGCCAGCATTGAAGCCCTGATAGATGCCGGTTGCGAACACATCTTC 40404 || ||||| || ||||||||| | || || |||| ||||| || || || || | || Sbjct 2947282 GTTGCATCGAAGAACGCCAGCCTCGAGGCTTTGATTGATGCTGGATGTGAGCATCTGTTT 2947223 Query 40405 CTGTGGGATGATGACGCGTGGCCGATTGCTGATGGCTGGCATATTCCGTATATCGAGTCT 40464 ||||||| |||||||| ||||| || |||| ||| ||| | || || ||||| || Sbjct 2947222 TTGTGGGACGATGACGCATGGCCTATAGCTGGTGGATGGGAACAGCCTTACATCGATTCA 2947163 Query 40465 CCTGAGCCTCATCTGGCATATCAGTTTCTCGACCTGGCAGGCCCGCGAAAGCTGAATGAC 40524 || ||||| || || || || ||||| || |||||||| ||||| || ||||| || ||| Sbjct 2947162 CCCGAGCCGCACCTCGCTTACCAGTTCCTTGACCTGGCTGGCCCACGTAAGCTTAAAGAC 2947103 Query 40525 CTTTCAGTCCTGTACCGCGATGAAAAGCACATCGCCTACACCGGGCAGCGCGGCGTGATG 40584 || | || ||||||| || || ||||||||||| |||||||| ||||| ||||||||| Sbjct 2947102 CTCGCCGTACTGTACCAGGACGATAAGCACATCGCTTACACCGGACAGCGAGGCGTGATG 2947043 Query 40585 CTCTATTACCACCGGAGCGCGATTGAAAAGGTTGGCGGGTTCGACCCGGTTTACGGGCGC 40644 || || |||||||| |||||||| ||||||||||| ||||||||||||||||||||| Sbjct 2947042 CTTTACTACCACCGCTCAGCGATTGAGAAGGTTGGCGGCTTCGACCCGGTTTACGGGCGC 2946983 Query 40645 GGGATGTACGAGCATTCAGACCTCGCTCTGCGCATTCATAATGCAGGGCTTACCTCATGG 40704 || |||||||| || || ||||| || || ||||||||||| || ||| | ||| ||| Sbjct 2946982 GGCATGTACGAACACTCTGACCTGGCGCTACGCATTCATAACGCCGGGTTAACCAGCTGG 2946923 Query 40705 GCATATGCAGACGTTATCGGCTCTGAGAAGCTGATTTACTCGCTGGATGAGCATGAGTCG 40764 || | || |||||| ||||| || |||||||||||||||||||| || ||||| || Sbjct 2946922 GCGTTCGCTGACGTTGCTGGCTCCGAAAAGCTGATTTACTCGCTGGACGAACATGAAGCG 2946863 Query 40765 GTAGAGCGCTCAGTACCCAAGCCTGAGCGAGA-GCGTCAGGTCAGCAACAACGTAAAAAT 40823 || || || |||||||| |||||||| || || ||| | | ||| |||||| | || Sbjct 2946862 GTGGACCGTTCAGTACCGAAGCCTGACCGTGAAGCGCTGGTTAAGCG-CAACGTGACGAT 2946804 Query 40824 TCACAACGAGCGCCGAGACACGGGCTACACAGGATGGGCACCGTACCGCAGACAGCGCAA 40883 ||| |||||||||||||||| || ||| | |||| || ||| || || |||||||| Sbjct 2946803 TCATAACGAGCGCCGAGACAGCGGATACGCCGGATATGCTGAGTATCGAAGCCAGCGCAA 2946744 Query 40884 TGCCGTCATCACAACCTTGCTGACCAGTCATCCTGACCCGCAGCGAGGAACCA 40936 | || ||||| || |||||||||| || |||||||| ||||| || |||| Sbjct 2946743 CGTGGTTATCACGACACTGCTGACCAGCCAGCCTGACCCACAGCGCGGTACCA 2946691 Score = 91.5 bits (100), Expect = 4e-14 Identities = 182/261 (70%), Gaps = 14/261 (5%) Strand=Plus/Minus Query 41814 TTCTATCTTGGCACCGGTCGCCCGCCGCAGTATCAGCAGCAGATTGCTGAAAGCCTTATC 41873 ||||| || ||||| || ||||||||||| || ||| |||||| || | ||||| ||| Sbjct 2945133 TTCTACCTCGGCACGGGACGCCCGCCGCAATACCAGATGCAGATAGCAGCCAGCCTCATC 2945074 Query 41874 GCTGCGGATAAATTTCGGGGAGATTACATCACCCTGAACCGACTGATTCACGGCGTCTGC 41933 | || || || | | || |||||||| || | | || | |||||||| ||| Sbjct 2945073 GAGGCAGACAAGCGGCAGTCCGACTACATCACGATGGATAGGCTTTTGCACGGCGTGTGC 2945014 Query 41934 TA-TGCGCTGCCAGCCAGCGGAATTAAAAACATCCTGCTGAACTGGAGC--CAGCGAAAG 41990 || || || ||| | | ||| || | | |||||| |||||||| | || | |||| Sbjct 2945013 TACAGCCCT-CCACCGAACGGCATCAGCACAATCCTGAAGAACTGGAACAGCA-CTAAAG 2944956 Query 41991 CCGGCAGATTATGCCCTCGGCGA--CGCATGG--GGAAGGGATGTTATTTACCCTTGCTA 42046 || || || |||||| | || || ||| ||| | ||| || || || || ||||| Sbjct 2944955 CC-GCCGACTATGCCGTTGGTGATGCGCTTGGCCGCAAG----GTCATCTATCCGTGCTA 2944901 Query 42047 TTCACTTGTAGACCATGCCGA 42067 ||||| || ||||||||||| Sbjct 2944900 CTCACTGGTGGACCATGCCGA 2944880 >seq3245 Length=6216 Score = 221 bits (244), Expect = 4e-53 Identities = 473/691 (68%), Gaps = 22/691 (3%) Strand=Plus/Minus Query 40888 GTCATCACAACCTTGCTGACCAGTCATCCTGACCCGCAGCGAGGAACCAGGATGAAGCCA 40947 || ||||| || |||||||||| || |||||||| ||||| || |||| ||| ||| Sbjct 6210 GTTATCACGACACTGCTGACCAGCCAGCCTGACCCACAGCGCGGTACCAAACTGACTCCA 6151 Query 40948 G-AGCAGTC--GCTTATCGCCAGATGGTCAGAATCGATTAAAGGTGCCGATGCGGTCATT 41004 | | | | ||| | || || ||| | | || |||||||| || ||||| || | Sbjct 6150 TTACCTGACCTGCTGA--GCAAG-TGGGCCGCGTCAATTAAAGGCGCTGATGCTGTTGTG 6094 Query 41005 CTCGCTGACGAGTTCGA-ATATTCCCCACCAGGCCAGACAACGGTACGCGTACCTGTCGT 41063 || |||||||| || | | || | | || || || | || || |||| || Sbjct 6093 CTGGCTGACGAACTCCCTACAGCACCGAACGGGGCAACCATCCAC-CGGGTGCCTGATGT 6035 Query 41064 AGATATGAATGTTTACTTCCGGCGCTGGCTGCATATCTGGCAGCACCTGCGGGAGCATCC 41123 | ||||| || ||||||||||||||||||||||| | ||| |||| || |||||||| Sbjct 6034 GGCGATGAACGTCTACTTCCGGCGCTGGCTGCATATTTACCAGTACCTTCGCGAGCATCC 5975 Query 41124 GGAATATCGTTTCGTCTGGTGTACCGATGGAACCGATGTCGAAATGCTTCGCGCGCCATG 41183 ||||| || |||||||||||||||||||| || || || || ||||| |||| ||||| Sbjct 5974 TGAATACCGGTTCGTCTGGTGTACCGATGGCACTGACGTGGAGATGCTGCGCGAACCATG 5915 Query 41184 GGAAGAAATGCAGCCCGGCGTGATTTATGTCGGCTCTGAGCCAAAGACATATTCCGATGA 41243 || || ||| |||| ||| | |||||||| || ||||||||||| || | || | Sbjct 5914 GGCGGAGATGGAGCCTGGCCGACTGTATGTCGGTTCGGAGCCAAAGACCTACGCTGACGC 5855 Query 41244 ATGGGTCATCAAAAACCATCCCGAGCG--CGTAT-ATCAG-TCATTCCTGAAGCAGTATT 41299 ||||| || | || || || ||||| | ||| | || ||||| | | | || Sbjct 5854 ATGGGCCACTACCAATCACCCGGAGCGGCCTTATGCTGAGTTCATTGCCGCA----CATC 5799 Query 41300 CCAGTGACACTATGCTGAACGCCGGATTGCTTGGAGGGTTACGCCAAGATGTCATGGAGT 41359 | ||| ||||| ||||| || |||| || || ||| ||||||| |||| | Sbjct 5798 GTAATGAGCTGATGCTTAACGCTGGCCTGCTCGGTGGCACACGTGAAGATGTGATGGCAT 5739 Query 41360 TTGCTCACCGCATCGTGCGGCTTTACTACCGCATTGAGTCAGACCGCTTCT--GGAATAA 41417 || || ||||| || | | || || | |||||| || | |||| || | | Sbjct 5738 ACGCGCATGCGATCGTCCGCATCTGGTATCGTACCGAGTCAAACAGGTTCTGGGGCAAAG 5679 Query 41418 AGAAGGGGCAGCAAGGGCGGTAGGTGACATGATCGCATTCGGTATCGTGGTGAAATC-GT 41476 ||||||| ||| | | || || || |||||||||||||| ||||| | | ||| | Sbjct 5678 AGAAGGGCAAGCCATG--CGTGGGCGATATGATCGCATTCGGCATCGTTG-GTTATCAGC 5622 Query 41477 TCGGTGACCGAGTGATTACCGGCCCGAAAGTGCACACGGTGTTTAAGACCAACGGCATCG 41536 | ||| | || | ||||||||| |||||| || |||||||| || | ||| | | Sbjct 5621 AGCGCGACAAACTGGTGACCGGCCCGCGAGTGCATACCGTGTTTAAAACTGATGGCGTGG 5562 Query 41537 GCAAGGAAACAGCATGGTGGCAGCACAAGTA 41567 | || || || |||||| |||| || || Sbjct 5561 GTAAAGAGTGCGCCTGGTGGAAGCATAAATA 5531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152222277911438