Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq122 167 4e-36 >seq122 Length=4874392 Score = 167 bits (184), Expect = 4e-36 Identities = 218/299 (73%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACG---AAAAAGCA 122419 |||||||| ||||||| ||| ||| |||| | || | ||||||| ||||| Sbjct 3442842 ATGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGCA-GGGCACGCCCAAAAAT-- 3442786 Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| || || || ||||| |||||| | || || || ||||| || | ||||| Sbjct 3442785 GACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAATCTGCAG 3442726 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | ||||| ||||||||||| ||||| ||| || | ||||| ||||| |||||||| Sbjct 3442725 GACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCATGAGCTG 3442666 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| | || || ||||||||| || ||||| || || || || ||| Sbjct 3442665 CTGTGGTTCCTTAACGGTGACACCAACATCGCCTACCTGAAGGAAAATAAGGTGTCGATC 3442606 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||| || ||||| |||||| | ||| | ||||| ||||| || || || || ||||| Sbjct 3442605 TGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAACAGTGGCG 3442547 Score = 149 bits (164), Expect = 1e-30 Identities = 226/319 (71%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 123074 TCCTGTCAGCTGTATCAGCGCAG-TGCTGACATGTTCCTAGGCGTACCGTTTAACATTGC 123132 ||||| || |||||||||||| ||| || || ||||| ||| | ||||| || || || Sbjct 3442365 TCCTGCCAACTGTATCAGCGCTCCTGC-GATATCTTCCTCGGCCTGCCGTTCAATATCGC 3442307 Query 123133 CTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACTT 123192 | ||||| | ||| | || ||| | ||||||||| | | ||| ||| ||||| || Sbjct 3442306 CAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGATTT 3442247 Query 123193 CGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTGCA 123252 || ||||| ||||| ||| ||||||||| |||||||||||||||| | |||| Sbjct 3442246 TGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCCTGCA 3442187 Query 123253 GTTAACTCGCGAACCTCATCCGTTACCACAACTGCGGATTAAACGTCGTCCGGATTCTAT 123312 | | || |||||||| | | | || | ||| || || || ||||| ||||| Sbjct 3442186 GCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGTCTAT 3442127 Query 123313 CTTCGACTATAAGTTTGAAGATTTCGAAGTGGTCGGATACGAATCGCATGACGCTATTAA 123372 |||||||||| ||||| || ||||| | | || ||||| ||||| || ||||| Sbjct 3442126 CTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGCATCCGGCCATTAA 3442067 Query 123373 GGCACCGGTGGCGATATGA 123391 || ||||| || || ||| Sbjct 3442066 AGCCCCGGTCGCCATCTGA 3442048 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 122789 ATCGACCAAATCAGCAAGGTCATGGAACAACTGAAAAACGACCCGGACAACCGCCGTATC 122848 |||||||| | |||||||| | ||||| ||||||| |||||||||| ||||| ||| Sbjct 3442518 ATCGACCAGCTGAGCAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGCATC 3442459 Query 122849 ATCGTCAGTGCCTGGAACGTGGCTGACCTGGATGAAATGGCGTTAGCACCATGCCATGCC 122908 ||||| ||| |||||||| | || |||||||| |||||| | || || ||||| || Sbjct 3442458 ATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCACGCG 3442399 Query 122909 TTCTTCCAGTTCTAC 122923 ||||||||||||||| Sbjct 3442398 TTCTTCCAGTTCTAC 3442384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777571121134800