Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq122 239 5e-58 seq83 165 9e-36 >seq122 Length=4874392 Score = 239 bits (264), Expect = 5e-58 Identities = 331/462 (72%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 40454 TCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGT 40513 || || ||||| ||||||||| | || || || || || |||||||||||| | || Sbjct 2805874 TCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGC 2805933 Query 40514 GTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTC---TGCGATC 40570 ||| | ||||| | || || |||| ||| ||||||| ||||| ||||| Sbjct 2805934 GTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGC---CACCTCCAGCGCGATT 2805990 Query 40571 GTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATG 40630 |||||||| |||| || ||||| ||||| || ||||||| || | || || || || Sbjct 2805991 GTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTG 2806050 Query 40631 GGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAACAT 40690 || ||||| || |||||||| | || || || ||||| |||| || || Sbjct 2806051 GGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCAC 2806110 Query 40691 ATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTG 40750 | || ||||| || || ||||| || ||||| ||||| || || ||||| || || ||| Sbjct 2806111 TTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTG 2806170 Query 40751 TATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGC 40810 | || || | |||||||||||||| |||| ||| |||||| ||||||||||| ||| Sbjct 2806171 TTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGC 2806230 Query 40811 GTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATGTAT 40870 || |||| |||||||| |||||| | || || || || ||||| ||| || |||||||| Sbjct 2806231 GTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCTGATGTAT 2806290 Query 40871 AAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTCCG 40912 | ||| | |||| |||| | ||||| ||||| || ||| Sbjct 2806291 CAGCGCCTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCG 2806332 Score = 123 bits (136), Expect = 3e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 50851 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 50910 ||||| || || |||||| | ||||| ||||| || |||| ||||| || || ||| Sbjct 3215822 GTGGAGGGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCG 3215763 Query 50911 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 50970 || | || || || ||||| || ||| | || || || ||||| |||||||| |||||| Sbjct 3215762 GTGAAGCACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGT 3215703 Query 50971 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTACAGAGAGT 51030 |||||||| |||| || |||||||| || ||||| || | | |||||||| || || Sbjct 3215702 TTTAACTCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGC 3215643 Query 51031 CTATAA 51036 || ||| Sbjct 3215642 CTTTAA 3215637 Score = 102 bits (112), Expect = 9e-17 Identities = 195/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 41652 ACGGCTTGCGCAACTCTACTCTTTCTGCTTTAATGCCTTGTGAAAGTAGTTCACAGGTTA 41711 ||||| ||||||||||||| || ||||| | ||||| | ||| | ||| ||| | Sbjct 2807084 ACGGCCTGCGCAACTCTACGCTCTCTGCCCTGATGCCGTCTGAGACCTCTTCCCAGATCT 2807143 Query 41712 GTAACTCTACCAACGGGATCGAACCTCCGCGCGGTTTAGTGAGTATCAAATCTTCGAAAG 41771 ||| | |||||||| || ||||| ||||||||| | || || ||| | ||||||| Sbjct 2807144 CGAACGCCACCAACGGTATTGAACCACCGCGCGGTCATATCAGCATTAAAGCGTCGAAAG 2807203 Query 41772 AAGGACACTAT-AACCAGGTTGTGCCTAACCAGAATAACCAGATTGATTTCTATGATCTG 41830 | || || | | ||||| ||||| | | | || || ||| ||| || ||| Sbjct 2807204 ACGG-CATTCTGCGTCAGGTGGTGCCAGAGTATGAGCGCCTGAAAGATAACTACGAACTG 2807262 Query 41831 CTCTGGGATATGGCTAAACGCGGTAACAAAGGGTATCTGTCTCATGTAGCAGTTATGCAG 41890 || ||||||||| | || |||| | || || ||| | || | | |||||| Sbjct 2807263 CTGTGGGATATGCCAAA------TAACGACGGTTACCTGCAGCTGGTCGGCCTGATGCAG 2807316 Query 41891 AAGTTTGTCGATCAGTCTATTTCTGCAAACACCAACTATGACCCG 41935 || ||| |||| ||| | ||||| | ||||||||||| |||||| Sbjct 2807317 AAATTTATCGACCAGGCCATTTCATCCAACACCAACTACGACCCG 2807361 Score = 100 bits (110), Expect = 3e-16 Identities = 186/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 39344 GAACAACTGAAATCAACCCCAGACGATCGCGGGATCATCGTTTCGGCATGGAACCCTGTT 39403 ||||| |||||| ||| ||| ||| | ||||||||||| ||||||||| | Sbjct 3442494 GAACAGCTGAAAAGCGACCCGGACTCGCGCCGCATCATCGTTTCTGCATGGAACGTCGGC 3442435 Query 39404 GATCTTGATGATATGGCATTGCGTCCGTGTCACTGTTTCTTTCAGTTCGTTGTAATCAAC 39463 || || ||||| ||||| || ||||| ||| ||||| |||||| || || Sbjct 3442434 GAACTGGATGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCTACGTTGCGGAC 3442375 Query 39464 GGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTGATGTCTTCTTAGGGTTGCCGTTC 39523 || || || || || ||||||||| || ||| ||||| | || |||||||| Sbjct 3442374 GGCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTC 3442315 Query 39524 AATATCGCCTCCTATGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTACGAAGTG 39583 ||||||||| ||| ||| | ||| |||||| || || | |||| |||||| Sbjct 3442314 AATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTG 3442255 Query 39584 GGCGATCTGGTTTGGACTGGTGGTGATGTCCAT 39616 || ||| | || ||||| ||||| ||| |||| Sbjct 3442254 GGTGATTTTGTCTGGACCGGTGGCGATACCCAT 3442222 Score = 96.9 bits (106), Expect = 4e-15 Identities = 201/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 42223 GCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCTGGCGTCC 42282 ||||||| | | | || |||| |||| |||| ||||| |||||||||||||| || Sbjct 2807728 GCAGAAATATGACATCTTTGAAAAGCTGATCGAAAAGCAGCTCTCTTTCTTCTGGCGCCC 2807787 Query 42283 GGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAACATGAAAA 42342 ||||||||| || | || || ||||| | ||| || || || || ||||| Sbjct 2807788 GGAAGAAGTGGACGTCTCGCGCGATCGTATTGACTATCAGGCGCTGCCAGAGCACGAAAA 2807847 Query 42343 AATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGG 42402 | ||| || ||||| ||||||| || ||| | || | ||||||||||| | Sbjct 2807848 ACACATCTTTATCAGCAACCTGAAGTATCAGACTCTGCTGGACTCTATTCAGGGACGCAG 2807907 Query 42403 GCCTAACCTCGCATTTTTGCCAATTGCATC-CGATGTGAGCA-TGGAAACCTGGATCGAA 42460 || ||| | || || |||| | ||| |||| | | ||||||||||||| ||| Sbjct 2807908 CCCGAACGTGGCGTTGCTGCCGCT--GATCTCGATCCCGGAACTGGAAACCTGGATTGAA 2807965 Query 42461 ACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAA 42516 || |||||||| || || |||||| ||| ||||| |||||| ||||| Sbjct 2807966 ACCTGGGCGTTCTCCGAGACTATCCACTCGCGTTCGTACACCCATATTATTCGTAA 2808021 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 152188 TCCCGACTAAACGCGATCTTCTGGCGGGTATCGTTTCTAAACATATGGCGCGTAACCATA 152247 |||| ||| | |||||||| ||||| || ||||| | ||||| || ||| | |||| Sbjct 3819959 TCCCCACTCAGCGCGATCTGCTGGCCGGGATCGTCGCCAAACACTACGCCCGTCAGCATA 3820018 Query 152248 TTCTACCGAAACATATTGTAGAGGCGCATGATTCCGGTGATATTCATTATCACGATCTGG 152307 | || ||| || | || || ||||| ||| || || || ||||||||||| | Sbjct 3820019 TGCTGCCGCGTGATGTGGTCAGCGCCCATGAGCGCGGCGAGATCCACTATCACGATCTCG 3820078 Query 152308 ATTACAGCCCGTTCACCCCATACACTAACTGCTGTCTTGTTGACCTAAAAGGCATGTTAG 152367 | ||| ||||| ||| ||||||| || | ||||| |||||| | Sbjct 3820079 ACTACTCGCCGTTTTTCCCGATGTTTAACTGCATGCTGATCGACCTGCGGGGCATGCTGA 3820138 Query 152368 AAAACGGGTTCCGTATGGGTAACGCTGATATCGAACCGCCTAAATCAATC 152417 |||| ||| ||||||||||| || |||||||||||||| || ||| Sbjct 3820139 CGCACGGCTTCAAAATGGGTAACGCCGAGATCGAACCGCCTAAGTCGATC 3820188 >seq83 Length=912621 Score = 165 bits (182), Expect = 9e-36 Identities = 290/421 (69%), Gaps = 6/421 (1%) Strand=Plus/Plus Query 40458 TACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAG 40517 |||| || ||||| ||||| || ||||| || || || ||||| ||| | || || Sbjct 579780 TACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGC 579839 Query 40518 TAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT---GCGATCGTGA 40574 | || || | || ||| | | ||| | ||||| || ||| || ||||| | Sbjct 579840 TTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCC---ACTTCTAGTGCTATCGTTA 579896 Query 40575 AGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATGGGTT 40634 | || |||||||||| || || || || | || || || | |||||| || | || Sbjct 579897 AATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCA 579956 Query 40635 CTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAACATATTC 40694 ||||||||||||||||||| | ||||| ||| || || |||| ||||| | | Sbjct 579957 GCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACACTTCC 580016 Query 40695 AAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATT 40754 | || || || ||||| || || || || ||||| || || ||||| || ||||||| || Sbjct 580017 AGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTT 580076 Query 40755 ATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAG 40814 | ||| | ||||| ||||| |||||| | | | || |||| || ||| || || | Sbjct 580077 ACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTG 580136 Query 40815 AAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATGTATAAAC 40874 ||| ||||| || ||||| || ||||| || ||||| | ||| | | |||||| ||| Sbjct 580137 AAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTATCAAC 580196 Query 40875 G 40875 | Sbjct 580197 G 580197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557949916076040