Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_020083.1 Length=157834 Score E Sequences producing significant alignments: (Bits) Value seq83 87.8 2e-12 seq122 86.0 6e-12 >seq83 Length=912621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 268/405 (66%), Gaps = 12/405 (3%) Strand=Plus/Plus Query 106060 CCGACCCCGATCATGGCTGGCGTCCGTACCCGTACCCGTCAGTTCAGCTCCTGTGTGCTG 106119 || || || ||||||||||| || || || | || || || |||||||| || ||||| Sbjct 579782 CCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTT 579841 Query 106120 ATCAAAGTCGGCGACACGCTGGACTCTATCAAGGCCGCAGGCTCTGCTATCGTTGACTA- 106178 ||| | ||||| | | ||||||||||| ||| | |||||||||| | || Sbjct 579842 ATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATAC 579901 Query 106179 -TGTCAGCAAGCGCGCAGGCATCGGTCTGGACGTGGGGGAGATTCGTGCCCTCGGTGCTC 106237 | ||| ||| |||||||| |||||| | | | || |||||||| || || | Sbjct 579902 GTTTCA-CAA-CGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCC 579959 Query 106238 CTATCCGTGGCGGTGAGATGGAGCATACCGGAACTATCCCATTCATCAAGAAGTTC--GT 106295 | |||||||| ||||| |||||||| |||||| ||| ||| | ||| | Sbjct 579960 CAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGA 580019 Query 106296 CGGTGACCTGAAGAGCTGCTCTCAGGGTGGGGTTCGCGGCGGCTCTATGACTGCCTACTA 106355 || | | |||| ||||| || || || || ||||| || | ||| | || Sbjct 580020 CG--GCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTA 580077 Query 106356 TCCGATGTGGCACCT-GCAGTTCCCAGCCATGATT-GTTCTGAAGAATAACCGTGGCACT 106413 || ||||||||| | | | || ||| | ||| || ||||| ||||||||||| | Sbjct 580078 CCCTATGTGGCACTTGGAAATTGAAAGC--TTATTAGTCCTGAAAAATAACCGTGGTGTT 580135 Query 106414 GAGAACAACCGCGAACGCCGCACTGATTATGGTGTGCAGATCAAC 106458 || ||||| | || | | ||||| || || || |||||| Sbjct 580136 GAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAAC 580180 >seq122 Length=4874392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19326 ATTTGGTAGTCCCTGTTGGCTTTGAACCAACGACCAAGCGATTATGAGTCGCATGCTCTA 19385 || |||| | ||| | ||| |||||||| |||||||||||||||||||||| ||||||| Sbjct 217169 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 217228 Query 19386 ACC-ACTGAGCTAAGGG 19401 ||| ||||||||| ||| Sbjct 217229 ACCAACTGAGCTATGGG 217245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504901269447120