Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq11 138 7e-27 seq22 127 1e-23 seq64 123 2e-22 seq275 105 4e-17 seq326 100 2e-15 seq212 86.0 4e-11 >seq11 Length=3525032 Score = 138 bits (152), Expect = 7e-27 Identities = 243/353 (69%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 475808 GTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTA 475867 ||||| ||||| || |||||||| || | | || | || ||| || |||| ||| Sbjct 609848 GTTGCTTATGGTGCAGCTGTCCAGGCTGGTGTTCTCTCTGGTGAACAAGAC-----ACTG 609902 Query 475868 AATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGG 475927 | | |||||| ||| | || || | || ||| | | ||| ||||||| |||||||| Sbjct 609903 A-TGCTATTGTCCTTTTGGATGTGAACCCTCTTACCCTGGGTATTGAAACTGTTGGAGGT 609961 Query 475928 ATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTT 475987 | ||||| || || || | | || ||| ||||| ||| || ||| | | || Sbjct 609962 GTAATGACAAAGCTCATCCCCCGCAACACTGTCATCCCTACCAAGAAGTCACAGATCTTC 610021 Query 475988 TCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAA 476047 || || | |||| || || ||||| ||||| ||| | | |||||||||| | Sbjct 610022 TCAACAGCTGCTGACAACCAGCACACTGTTACCATTCAAGTGTATGAAGGTGAACGTCCC 610081 Query 476048 TTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCC 476107 | || || || || || | ||||| | ||| ||||| || |||||||||||||| Sbjct 610082 ATGACCAAGGACAACCACCAGCTTGGCAAATTTGATCTTACTGGCATTCCTCCTGCTCCA 610141 Query 476108 AGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCT 476160 | || ||||| |||||||| || ||||| || |||||||| || |||||||| Sbjct 610142 CGTGGTGTTCCCCAAATTGAGGTCACTTTCGAAATTGATGCCAACGGTATTCT 610194 >seq22 Length=2893874 Score = 127 bits (140), Expect = 1e-23 Identities = 218/317 (69%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 297322 GTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCATTATCCTTTT 297381 || || ||||| ||||||||| || || ||||| |||| |||| ||||||||| ||| Sbjct 1889251 GTATTTGATTGCTGGTTTGAAAGTGGATCCATGCCCTATGCTCAAGCTCATTATCCATTT 1889310 Query 297382 GAAAATTCCGAAATTTTAGACACTTCACAAGATTATATTGCAGATTTTATAACAGAATCA 297441 ||||| | || || || | || || ||| |||||||| | ||| Sbjct 1889311 GAAAACAGCAAAGAGTTTGAGA------AATGTTTCCCTGCTGATTTTATTGCTGAAGGG 1889364 Query 297442 ATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATTTAAC 297501 ||||| || || ||||| |||||||||||| | | ||| ||||||| ||| | ||| Sbjct 1889365 ATTGACCAGACTAGAGGCTGGTTTTATACTCTTCTTGTTATTTCTACTGCTCTCTTTGGT 1889424 Query 297502 AAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCAGCTGATGGACAAAAA 297561 ||||| | |||||||| | || | | || ||||| ||| | ||||| ||||| Sbjct 1889425 AAACCCCCTTTTAAAAACCTTATAGCAAATGGCCTTGTTTTGGCATCAGATGGTCAAAAG 1889484 Query 297562 ATGTCAAAAAGTAAAGGTAATTATCCTGATCCAAATATTTTGATGGATAAATATGGTGCA 297621 |||||||| || || || || ||||||||| | | | |||| ||||||||| Sbjct 1889485 ATGTCAAAGAGAAAGAAAAACTACCCTGATCCACTTGAGGTAGTAAATAAGTATGGTGCA 1889544 Query 297622 GATACTTTACGTCTTTA 297638 ||| | | |||||||| Sbjct 1889545 GATGCCCTCCGTCTTTA 1889561 >seq64 Length=1295264 Score = 123 bits (136), Expect = 2e-22 Identities = 251/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| ||||| ||| | ||||| || ||||| ||||| ||| | || ||||| || || Sbjct 192001 ATTTCAGATGCCAAACGTTTGATCGGCCGTAAATTTGAAGATGCTACAGTCCAGTCGGAC 191942 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAA 474629 ||| || |||||||| | || || | | ||||| ||||| | | || | | Sbjct 191941 ATGAAGCACTGGCCTTTCACTGTTATCAGCGAAGGTGGCAAACCCAAACTGAAGGTGGAG 191882 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || |||| || | || || || |||| || ||||| | | | Sbjct 191881 TTCAAG--GGCGAGGCTAAGACTTTCTACCCTGAGGAAGTTTCATCTATGGTCCTCACAA 191824 Query 474690 AAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACT 474748 | ||||| | || ||| |||| ||||| ||||| || || | || ||| | || Sbjct 191823 AGATGAAGGAGACTGCGGAAGCATACCTTGG-CAAGACTGTCACCAACGCCGTAGTCACC 191765 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || |||||||| ||||||||||| ||||| || || || ||||| || | ||||| Sbjct 191764 GTACCCGCATATTTCAATGATTCTCAGCGTCAGGCCACCAAGGATGCTGGTACCATTGCT 191705 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 | || || || | |||||||| || || || || || || || | ||||||||||| Sbjct 191704 GCACTGAACGTCCTCCGTATTATCAACGAGCCCACTGCTGCTGCCATCGCTTATGGTCTC 191645 Query 474869 GATAAGAA 474876 || ||||| Sbjct 191644 GACAAGAA 191637 Score = 91.5 bits (100), Expect = 1e-12 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||||||||| || || || ||| || || | || | || | || || Sbjct 192486 GCTATTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGAGTATTCCAGCACGGAAAG 192427 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||||||||| ||||| ||||| || || ||||| |||| ||| Sbjct 192426 GTTGAGATTATCGCCAATGACCAGGGTAACAGAACCACCCCTAGTTATGTGGCTTTCACT 192367 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || || || | ||| ||||||||||| ||||| | |||| Sbjct 192366 GACACCGAGCGTCTCATTGGAGATGCCGCTAAGAACCAAG 192327 >seq275 Length=398669 Score = 105 bits (116), Expect = 4e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||| ||||||||||||||||||||||| || || || || || ||||||||||| Sbjct 170691 ATCCTCAAGCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTT 170632 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| ||||| || |||||| ||||||| || | | || | || | ||| || Sbjct 170631 GTCCTGAATTTTGGCTTTGACGTTCTCAATAGAGTCTGAGGGTTCAACCTCTAAGGTGAT 170572 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || ||||| || || || || || || Sbjct 170571 AGTTTTCCCAGTGAGGGTTTTCACAAAGATCTG 170539 >seq326 Length=250163 Score = 100 bits (110), Expect = 2e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 ||| ||||| || || || ||||| || ||||| || || ||| | |||||||||||||| Sbjct 174820 AGTGACTGAAGCCGTTATCACTGTACCGGCATACTTCAACGATGCGCAACGTCAAGCAAC 174879 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 ||||||||| || | || ||||| | | ||| ||||| || || ||||||||||| Sbjct 174880 TAAAGATGCTGGCCGTATCGCAGGGTTAGAAGTTAAGCGTATCATCAACGAACCAACAGC 174939 Query 474847 AGCCGCACTTGCTTATGG 474864 || || || || ||||| Sbjct 174940 CGCAGCGCTGGCGTATGG 174957 >seq212 Length=676889 Score = 86.0 bits (94), Expect = 4e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 355402 GTGAAGATATATCGTGCACTTGCATTATCTTTGCCTCCACTTAATCTTGTACCAAATTGA 355461 |||||||| || || ||||| ||| ||||| |||||| | | | ||||||||| ||| Sbjct 82478 GTGAAGATGTAACGAGCACTGGCAGAGTCTTTACCTCCAGTGAGACGTGTACCAAACTGA 82537 Query 355462 CCATTGGGAAGTAATAA-ATTTATGTTGTTACTTCCAACATAATTTTGTGC 355511 |||||||| | ||| || ||| || ||||| || |||| ||||||||| || Sbjct 82538 CCATTGGGCA-TAAGAAGATTAATATTGTTGCTACCAATATAATTTTGAGC 82587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267910549541924