Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq122 170 2e-37 seq83 93.3 4e-14 seq1959 89.7 5e-13 seq4531 82.4 7e-11 >seq122 Length=4874392 Score = 170 bits (188), Expect = 2e-37 Identities = 214/294 (73%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 76460 GAACGCCCAAGTCTCTACCCATGTTTCCAGGGTGGTGTCGGATACGATCGGCAGAAGAAC 76519 ||||||||| || || | ||| |||||||| | | || | | |||||| | | Sbjct 2807977 GAACGCCCAGGTTTCAATCCAGGTTTCCAGTTCCGGGATCGAGATCAGCGGCAGCAACGC 2807918 Query 76520 TGCGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGAT 76579 ||||||| | || ||||| | ||| ||||| || |||| ||||||||||||||||| Sbjct 2807917 CACGTTCGGGCTGCGTCCCTGAATAGAGTCCAGCAGAGTCTGATACTTCAGGTTGCTGAT 2807858 Query 76580 GAAGATGTGCTTCTCGTGATCCGGCAGGTTCATGTAGTCGATTCGGTCACGGGTCACGTT 76639 |||||||| || ||||| || ||||| | ||||| || || || || | |||| Sbjct 2807857 AAAGATGTGTTTTTCGTGCTCTGGCAGCGCCTGATAGTCAATACGATCGCGCGAGACGTC 2807798 Query 76640 AACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAACTTCGC 76699 |||||||| || ||||||||||| | || |||||||| |||||||| || || | | Sbjct 2807797 CACTTCTTCCGGGCGCCAGAAGAAAGAGAGCTGCTTTTCGATCAGCTTTTCAAAGATGTC 2807738 Query 76700 ATGTTTCTGCTGGTCGTAGCGAGAAACGTTCGGTGTCTCTCCGAGGAACATCGG 76753 || ||||||||||||| | || | ||||| | || ||||| ||||||||| Sbjct 2807737 ATATTTCTGCTGGTCGAAACGCGCCACGTTTACCGGCTGTCCGAAGAACATCGG 2807684 Score = 147 bits (162), Expect = 2e-30 Identities = 290/419 (69%), Gaps = 15/419 (4%) Strand=Plus/Minus Query 74855 GTTGATCCAAGGGATCGGGTTCTTGCCGGGCTTATCTGTCAACGCACCCAGACCAACTGC 74914 ||||||||| |||||||||||| || || ||| | || | |||||||||| || Sbjct 2808646 GTTGATCCACGGGATCGGGTTCGAGCGGGTTTTAAACGGCAG---ATCCAGACCAACAGC 2808590 Query 74915 CCGCATACGCTGGTCAGTGATATAGTCGATGTATCCGTC-CAGCATACCTTTGTTCAGTC 74973 |||||| || ||||| || || ||||| | | | ||| ||| |||| ||||| | Sbjct 2808589 GTTCATACGGATGTTGGTGATGTACTCAATGTA-CTGCCACAGAATATCTTTATTCAGGC 2808531 Query 74974 CAATCATCGACCCGTCTTTGAACAGGAAGCTGCCCCAGTCTTTCTCCTGCACCGATGCGT 75033 ||||||| || ||| | ||||||| | |||| |||||||||||| | | || Sbjct 2808530 CAATCATTGAACCGCCGCTGAACAGATATTCCGCCCACTCTTTCTCCTGCTCGGCAGCCA 2808471 Query 75034 CGATAAATCCCTGTCGT-GCTTCCTCGT-GGCAATCTTCTGCCA-CACGGGCAAA--CAG 75088 | || | |||| || || | |||| |||| || | | ||| || | | Sbjct 2808470 GCACGAA--CAGATCGTAGCACTCTTGACGGCACTCTTTAGCAATCTCGGCCATTTCCGG 2808413 Query 75089 GTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGGGTGCCGGACAAATGCAA 75148 || |||| || | | ||| | ||||||||| ||| ||||||| || |||| Sbjct 2808412 ATCGTCTTCCCCACTGCGCAGCAGGT---TCAGCATATGCTGAGTGCCGGTCAGGTGCAG 2808356 Query 75149 GGCTTCATCACGAGCAATCAGTTCGATAATGTTGGTGTTGCCCAGCATTACCCCGCGCTC 75208 |||||||| || || ||||| | || || |||| ||||| ||| | ||||||| Sbjct 2808355 AGCTTCATCGCGGGCGATCAGCTTAATGATTTTGGCATTGCCTTCCATCAGTTCGCGCTC 2808296 Query 75209 ACCGAAGGCGAAGGAGCAGGCAAAGCTCACGTAGAAGCGGATCGCTTCCAGTGCGTTGA 75267 | |||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||| Sbjct 2808295 GGCAAAGGCGAAAGAGCAGGCGAAGCTGACGTAAAAGCGGATCGCTTCCAGCGCGTTGA 2808237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 103302 CAGAAGGGGTCTGTTGAGCTATTGTATGAGGTATTCGGCGGGGAGGTTAACTCCAAAGGC 103361 ||||| ||||| || || | ||| ||| | |||||||| ||| || ||| ||| Sbjct 3983564 CAGAAAGGGTCGGTCGAAGTGCTGTGGGAGATCTTCGGCGGCACGGTCAATGCCAGGGGC 3983505 Query 103362 TATCGCACCTTGGACACTCACATCGGCCTGATTTACGGTGACTCCATCACCGTGGCTCGT 103421 || ||||| | ||| | || ||||| ||||| ||||| || ||| | | ||| Sbjct 3983504 TACAAGGTGCTGGACCCGCACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGCGT 3983445 Query 103422 GCCAAAGAGATCTTCGAG-CGCTTGGAGGCAAAGGGCTTTGCCTCAAGCAACATTGTGTT 103480 ||||| ||||| | ||| || ||||||| || ||||||||| ||||| | ||||| Sbjct 3983444 GCCAATCAGATCCT-GAGTCGTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTGTT 3983386 Query 103481 TGGTGTTGGTTCATACACCACGCAGTACAACACTCGTGACTCTCTTGGT 103529 || || || || || || ||||||||||| |||||| | ||||| Sbjct 3983385 CGGCGTCGGGTCTTATACGTACCAGTACAACACGCGTGACACCTTTGGT 3983337 Score = 93.3 bits (102), Expect = 4e-14 Identities = 270/411 (66%), Gaps = 11/411 (3%) Strand=Plus/Minus Query 79392 CACAGGTTGGACTGTTTCACCGGAGCCTGTTCTGGGTCAAACGGGCTGTTAGTGTTGCAG 79451 |||||||| ||||| ||| || || | | |||||||| ||||||| ||||||||| Sbjct 2806574 CACAGGTTAGACTGGCGCACTGGCGCGATTGCCGGGTCAAATGGGCTGTGGGTGTTGCAG 2806515 Query 79452 TGGTCAACGTGCTGCACGTAAATACGGCCCGTCTGTGAACGCTCTTGCCCAAATACGGAG 79511 |||||||||| ||| | ||| |||||||| || | || || ||| | | ||| Sbjct 2806514 TGGTCAACGTTCTGAATGTAGATACGGCCGGTAGAGGCGCGTTCCTGCATCATCAGCGAG 2806455 Query 79512 AAGGCATCCGCCGCCGAAATGGTTTTCTTCGCCACAGAAGGATCTGCTTCC----AGTTC 79567 || ||| ||||| | | | ||| || | | || ||| | | || Sbjct 2806454 AACAGATCTACCGCCTTCACGCGCTGCTT-GCGGATGCTG--TCGTCTTTCTCGTATTTG 2806398 Query 79568 CTCGTAAAGCTGTTGGAATTTCTCCTGATTAGAGAAGAAATACTCATACAACTTACCTTC 79627 | ||| || | | || | ||||||| | |||||| |||||||| || Sbjct 2806397 GT-GTACAGGCGCTCAAACTCATCCTGATCGGCGAAGAACGCGTCATACAAG---CCAGG 2806342 Query 79628 CGCCGCGTTAGGGTGGAACAATGTAATGTTCTTACCCTGCTGGAGGCGAGAGTACAGCAT 79687 | | || ||| ||||| ||||| | | ||||| | | ||||| |||| || Sbjct 2806341 CACGTCGGACGGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAG 2806282 Query 79688 TTTGTTCAACTGGAGTCCGTAGTCCACGTGGCGAGCACGGGTGCTCTCAGTACCTCGGTT 79747 ||||||| ||| | |||||||||| || || | ||| ||| ||| || ||||| Sbjct 2806281 CTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTT 2806222 Query 79748 GTTCTTCAGCACAATCAGACTTTCGAAATCCCAGTGCCACATCGGGTAGAA 79798 |||||||||||| | ||| ||||| | ||| |||||||| |||||||| Sbjct 2806221 GTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAA 2806171 >seq83 Length=912621 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 75117 TTCAGCATATACTGGGTGCCGGACAAATGCAAGGCTTCATCACGAGCAATCAGTTCGATA 75176 || ||||||| ||| || || | || |||| |||||| || || || || || ||| Sbjct 582336 TTTAGCATATGCTGTGTTCCCGTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATG 582277 Query 75177 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCACCGAAGGCGAAGGAGCAGGCAAAGCTC 75236 || |||| || || ||| | | | ||||| |||| ||||| || || ||||||||| Sbjct 582276 ATCTTGGCATTACCTTCCATCAGCTCACGCTCGGCGAACGCGAATGAACAAGCAAAGCTC 582217 Query 75237 ACGTAGAAGCGGATCGCTTCCAGTGCGTTGATGTTGTGAAGGCACAGGTACAGC 75290 |||||||| || || ||||| || || |||| | | ||||| ||||| ||| Sbjct 582216 ACGTAGAAACGAATGGCTTCGAGGGCATTGACGCTCATCAGGCAGAGGTAAAGC 582163 >seq1959 Length=43063 Score = 89.7 bits (98), Expect = 5e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 10294 TCATCACTCACTCTCCTGCATCATCAGGAACACGATCATCGCGGCGCGAAGGGGTTT 10350 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 386 TCATCACTCACTCTCCTGCATCATCAAAAACACGATCATCGCGGCGCGGAGGGGTTT 330 >seq4531 Length=1107 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 10290 TCGCTCATCACTCACTCTCCTGCATCATCAGGAACACGATCATCGCGGCGCGAAG-GGGT 10348 ||| |||||||||||||||||||||||||| ||||||||||||||||| || || |||| Sbjct 490 TCGGTCATCACTCACTCTCCTGCATCATCAAAAACACGATCATCGCGGCACGGAGTGGGT 431 Query 10349 TT 10350 || Sbjct 430 TT 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455353148749320