Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq83 149 6e-31 seq122 132 5e-26 >seq83 Length=912621 Score = 149 bits (164), Expect = 6e-31 Identities = 340/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Minus Query 133732 CACATC---TGGGCTGAACAGTGTGATGTACCCAT-TTTTACCGAGACGTTCCATCATCA 133787 |||||| ||| ||||| || | ||| | || ||||||| ||||||| ||| | Sbjct 580243 CACATCCGATGGACTGAATAGCGAGATATCGCCGCCTTTTACC-AGACGTTGATACATGA 580185 Query 133788 AATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGT 133847 | |||||||| | ||||||||||| ||||| | ||||| | || ||||| || Sbjct 580184 GTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGT 580125 Query 133848 TGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAG 133907 | || || | || || | | |||||| || | |||||||| || ||| | || || | Sbjct 580124 TATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCG 580065 Query 133908 CTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCC 133967 | ||||| || ||||| |||||||| || |||||||| || || ||||| || ||||| Sbjct 580064 CGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGT 580005 Query 133968 AGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTC 134027 |||| || || || ||||| |||| ||| || ||| |||| || | Sbjct 580004 AGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCAC 579945 Query 134028 GAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATA--TACTTAATAATACT 134085 |||| || || ||||| ||||| || || || ||| ||| | || |||| ||| Sbjct 579944 GAATACGGCCAGCATTGATACCGATCCCTGCGCG-TTG-TGAAACGTATTTAACGATAGC 579887 Query 134086 GTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACT 134145 || | || || ||||| | | ||||||| || |||| || || || || Sbjct 579886 ACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCT 579827 Query 134146 AAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGGCG 134205 || || ||||| || || || |||| ||||| || || ||||| || ||||| | Sbjct 579826 GAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAA 579767 Query 134206 AGTAGATACAGCATCATAAAAACGA 134230 || || || ||||||||||| ||| Sbjct 579766 GGTCGACACGGCATCATAAAAGCGA 579742 >seq122 Length=4874392 Score = 132 bits (146), Expect = 5e-26 Identities = 288/431 (67%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 133799 TGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTCTTTAAT 133858 |||| ||||| || | |||||| | |||||| | || || || ||||||||| | Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 133859 ACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 133918 |||| |||| |||| || || |||||||||||||| || | || || |||||||| || Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 133919 CGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATT 133978 || || ||||| ||||| || || || || || ||||| || || || |||| ||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 133979 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 134038 ||| || || | |||| || | || ||| || || || |||| Sbjct 2806091 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 2806032 Query 134039 GCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGCCGCA 134098 ||||| ||||||||||| || |||| | ||||| | ||| | | | || Sbjct 2806031 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 2805972 Query 134099 TTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGACGAGTA 134158 ||||| |||| || ||||| ||||| | ||| || || || ||||| || || Sbjct 2805971 TTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTC 2805912 Query 134159 GGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGGCGAGTAGATACAGCA 134218 || || || | || | |||||| || || |||| ||||||| || || | ||| Sbjct 2805911 GGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATCGCA 2805852 Query 134219 TCATAAAAACG 134229 || || ||||| Sbjct 2805851 TCGTAGAAACG 2805841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512539071455880