Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq83 104 3e-17 seq122 84.2 2e-11 >seq83 Length=912621 Score = 104 bits (114), Expect = 3e-17 Identities = 249/377 (66%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 151237 GCTATTGGGAAATACGTTGCACAAAGGGCGGGAATCGGTATCAACGCAGGCAGAATCCGT 151296 ||||| | ||||||||| ||||| | || || ||||||||||| || ||| | || ||| Sbjct 579887 GCTATCGTTAAATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGT 579946 Query 151297 GGCATCAACAGTAAAATCAGAGGTGGAGAAGTTCAGCACACGGGTGTTGTACCGTTCCTC 151356 | | ||| |||| | ||||| |||| | || || ||| | | |||||| | Sbjct 579947 GCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTAC 580006 Query 151357 AAAAAGTTTGAGTCAACTGTCAGATGTTGTACACAGAATGGCATCCGAGGTGGATCAGCG 151416 ||| | || || | | || | || ||| | || ||| | || || || | ||| Sbjct 580007 AAACACTTCCAGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCG 580066 Query 151417 ACAGTACACTTCCCCATCTGGCACCAAGAAATCGAAGACATCATTGTCCTAAAAAATAAT 151476 ||| | | ||| || |||||| ||||| ||| | | | ||||| |||||||| Sbjct 580067 ACACTGTTTTACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAAC 580126 Query 151477 AAGGGAACTGAAGATAATCGTGTTCGTAAGTTAGACTATAGCATTCAATTCAGCAAACTC 151536 || ||||| ||| ||||| ||| | |||| || || | ||| ||| ||||||| Sbjct 580127 CGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTC 580186 Query 151537 TTCTATGAACGTTTCATCTCCAACGGAGAAATCTCCCTCTTCAGTCCGCACAATGTTCCT 151596 | ||| ||||| | | ||| || ||||| || |||||||| |||| || Sbjct 580187 ATGTATCAACGTCTGGTAAAAGGCGGCGATATCTCGCTATTCAGTCCATCGGATGTGCCA 580246 Query 151597 GGTCTGTATGATGCTTT 151613 || || || ||||| || Sbjct 580247 GGGCTATACGATGCCTT 580263 >seq122 Length=4874392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 156615 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 156673 |||||||||||||||||||| | ||||||||||| || |||||||||||||| |||||| Sbjct 814347 TAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCCTGT 814405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547704318241080