Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq298 91.5 2e-13 seq664 84.2 3e-11 >seq298 Length=309835 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || || ||||| || | |||||||| || || ||||| ||||| ||||||||||| || Sbjct 32996 ACTCCTATAGGTCCCATACCAGGACCACCTCCACCATGGGGAATGCAGAATGTCTTGTGC 32937 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || ||||| | ||||| | || || |||| || || ||||| || ||| Sbjct 32936 AAGTTCAGATGTGACACATCAGATCCGTAATCACCAGGACGACAAAGGCCTACTTGAGCA 32877 Query 138303 TTTAGATTTGCACCATCGAGATATACCT 138330 || | |||||||||||| ||||| |||| Sbjct 32876 TTCATATTTGCACCATCCAGATAAACCT 32849 >seq664 Length=66043 Score = 84.2 bits (92), Expect = 3e-11 Identities = 178/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 138159 ACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCA 138218 ||||| || | |||||| | || || || || || | || || || ||||| || Sbjct 15392 ACAAACGGCGCGAGATGGGCTTTAACCCCTATCGGTCCCATTCCTGGCCCACCACCGCCG 15451 Query 138219 TGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACAT 138278 || |||||||||||||| ||||| | ||| || || | ||||| |||||| | | | Sbjct 15452 TGGGGAATACAGAATGTTTTATGCAGATTAAGGTGGGAGACATCGGCACCAATATGGCCT 15511 Query 138279 GGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCA 138338 ||| | | | || || |||||||| | || || ||||| || || || || ||||| Sbjct 15512 GGTGTGGTGATCCCCACTTGTGCATTCATGTTGGCGCCATCCAGGTAGACTTGCCCACCG 15571 Query 138339 TTGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGAT 138398 | | ||| || || | || | | | ||| | || | || |||||||| || Sbjct 15572 TGCTGATGGACAATTTCGCAGACTTCACGAATGGTCTGCTCGTAAACCCCATGAGTAGAG 15631 Query 138399 GGATATGTAATCATAATACATGAGAG 138424 ||||| || | ||| || || ||||| Sbjct 15632 GGATAGGTCACCATGATGCAGGAGAG 15657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578953071662760