Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq93 116 4e-21 seq212 84.2 3e-11 >seq93 Length=974399 Score = 116 bits (128), Expect = 4e-21 Identities = 164/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 64987 TTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAA 65046 |||||| | ||||| |||| | |||||| | |||||||||| | ||||| ||||| Sbjct 914849 TTATTTAATGCCATTGAAACACTCCCATGTGTGAAGAAGAAGGCCGATTGGGCCATGAAG 914790 Query 65047 TGGTTTGACACAA-AGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGA 65105 ||| ||| | || ||||| | | || || ||||| | |||| ||||| |||||| Sbjct 914789 TGGATTG-CTCATGAGTCTGCCACGTTTGCTGAGCGAGTAATTGCCTTTGCTGCTGTGGA 914731 Query 65106 GGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCA 65164 ||||||||||||||| || || ||| || |||| ||| | |||||| | || || | Sbjct 914730 GGGTATCTTCTTCTCTGGAAGCTT-TGCTGCCATTTTCTGGCTTAAGAAGAGAGGGCTTA 914672 Query 65165 TGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGG 65209 ||||||| || |||| ||||| | ||||| |||||||||| Sbjct 914671 TGCCAGGTCTTACCTTCAGCAATGAGTTGATTTCACGAGATGAGG 914627 >seq212 Length=676889 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14390 GTGATGTATGCTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCG 14449 || || ||| |||| || | | |||| |||| | ||| | || ||||| || | || Sbjct 82716 GTAATTTATACTTGTTTAAAAAGGAATGACAAGAAAGAAGTAAAAGTGGCTCAGTTAGCT 82657 Query 14450 GCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTATC-CTTAGCGGACACGAT 14508 | | || || || | || || ||||||||||||||||| || || | ||| ||||| Sbjct 82656 GGTTCAGTAGCAGAACATTCAGCTTACCACCATGGTGAAGTCTCACTCATGGGA-ACGAT 82598 Query 14509 TGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGG 14568 ||| || || || | | || | ||| ||||| ||||| |||||| || ||| Sbjct 82597 TGTCAACTTAGCTCAAAATTATATTGGTAGCAACAATATTAATCTTCTTATGCCCAATGG 82538 Query 14569 TCAATTTGGTACGCGTCTCATGGGTGGTAAGGA 14601 ||| |||||||| ||||||| || ||||| || Sbjct 82537 TCAGTTTGGTACACGTCTCACTGGAGGTAAAGA 82505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596522896057440