Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq64 277 2e-69 seq275 187 3e-42 seq43 167 3e-36 seq19 125 9e-24 seq11 114 2e-20 seq326 100 4e-16 seq63 89.7 7e-13 >seq64 Length=1295264 Score = 277 bits (306), Expect = 2e-69 Identities = 403/567 (71%), Gaps = 2/567 (0%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 || || ||| |||| |||||||| | | ||||||||||||||||||||| | | | | Sbjct 191854 CCTGAGGAAGTTTCATCTATGGTCCTCACAAAGATGAAGGAGACTGCGGAAGCATACCTT 191795 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || ||||| | | || || || || ||||| || || |||| |||||| || || Sbjct 191794 GGCAAGACTGTCACCAACGCCGTAGTCACCGTACCCGCATATTTCAATGATTCTCAGCGT 191735 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 ||||| || ||||| |||| | | ||||| | || ||| || | |||||||| || Sbjct 191734 CAGGCCACCAAGGATGCTGGTACCATTGCTGCACTGAACGTCCTCCGTATTATCAACGAG 191675 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || ||||| || ||||||||||| |||||||| | | || | ||||| Sbjct 191674 CCCACTGCTGCTGCCATCGCTTATGGTCTCGACAAGAAGGGCAGCAAGGAGAGCAATGTC 191615 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | || || ||||| ||||||||||| |||||||| || | || | ||||||| |||| Sbjct 191614 CTCATTTTCGATCTTGGTGGTGGTACTTTTGATGTGTCCATCCTGACCATTGAAGATGGT 191555 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCA 195991 || || ||||| ||| | || |||||||| || ||||| ||||||||||||||||| Sbjct 191554 ATCTTTGAAGTCAAGTCCACCGCTGGTGACACCCATCTTGGTGGTGAAGATTTCGACAAC 191495 Query 195992 CGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGG 196050 ||| | || || || ||| ||| ||| || ||| | ||||| || | | | Sbjct 191494 CGTATGGTCAACCACTTCGTC-CTTGAATTCAAGCGCAAGTACAAGAAGGAGCTCACCAG 191436 Query 196051 AAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTC 196110 || |||||||| | || | |||||||| |||||| | || || || || || || Sbjct 191435 CAACAAGAGGGCTCTCAGGCGTTTGAGGACTGCCTGTGAAAGGGCGAAGCGTACCCTTTC 191376 Query 196111 TTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATAC 196170 || | | || || || ||||| || || |||| || |||||||||||||| || Sbjct 191375 ATCCTCAACCCAGGCATCTGTGGAGATCGACTCCCTGTTCGAAGGAATTGACTTCTACAC 191316 Query 196171 AACTATTACCCGTGCACGTTTTGAAGA 196197 | || |||||||| |||||||| || Sbjct 191315 CTCCATCACCCGTGCTCGTTTTGAGGA 191289 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||||||||||| ||||| || || || ||||| || || || |||| || | | Sbjct 192486 GCTATTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGAGTATTCCAGCACGGAAAG 192427 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||||||| | |||||||| || ||| | || || || || || || || || Sbjct 192426 GTTGAGATTATCGCCAATGACCAGGGTAACAGAACCACCCCTAGTTATGTGGCTTTCACT 192367 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || |||||| ||||||||||||| || || || ||| |||||||| | || Sbjct 192366 GACACCGAGCGTCTCATTGGAGATGCCGCTAAGAACCAAGTAGCCATGAACCCCAGTAAC 192307 Query 195479 ACTGTCTTTG 195488 || |||||| Sbjct 192306 ACCATCTTTG 192297 >seq275 Length=398669 Score = 187 bits (206), Expect = 3e-42 Identities = 154/188 (82%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||||||||| ||||| |||||||||||| | |||||||| | ||| Sbjct 170536 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAAACTATCACCTTAGAGGTTGAACCCTCA 170595 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | || || ||| |||||||||| ||||| || |||||||| || || || || ||| Sbjct 170596 GACTCTATTGAGAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCCCCAGACCAG 170655 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || |||||||||||||| || |||||||| ||||| || || || | || |||||| Sbjct 170656 CAGCGTCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACACTGTCAGACTACAAC 170715 Query 172042 GTTCAAAA 172049 ||||||| Sbjct 170716 ATTCAAAA 170723 >seq43 Length=2082672 Score = 167 bits (184), Expect = 3e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| ||||| ||||| || || || || ||||| || ||||||||| Sbjct 900841 GTGGTATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTTGAGC 900900 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || | ||||| ||| |||| || ||||| || ||||| || ||||| || || | Sbjct 900901 CCTCGGATTCCATCGAGAACGTCAAGGCTAAGATCCAGGATAAAGAGGGCATCCCCCCAG 900960 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | || ||||| ||||| |||||||||||||| ||||| | |||| | Sbjct 900961 ACCAGCAGAGATTGATCTTTGCCGGTAAGCAGCTTGAAGATGGCCGTACTTTGTCTGACT 901020 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 |||| |||| ||||| || || || || ||||| || | || || ||||| Sbjct 901021 ACAATATTCAGAAGGAATCCACCCTCCATCTTGTCCTCCGTCTGCGTGGTGG 901072 Score = 147 bits (162), Expect = 3e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || || ||||| || || || || || || ||||| | || Sbjct 901074 ATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTGGAAGTTGAACCCTCT 901133 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || | || || ||| | || ||||| || ||||| || |||||||| || || |||||| Sbjct 901134 GATTCTATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 901193 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || |||||||| || |||||||||||||| || ||| | |||| ||||| Sbjct 901194 CAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCTGACTACAAT 901253 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGT 172070 | || |||||||| ||| |||| ||||| Sbjct 901254 ATCCAGAAGGAGTCCACTTTACATCTTGT 901282 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || | ||||| || || |||||||| ||||||||| | || Sbjct 888118 ATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCTCG 888177 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCC 171971 ||| | || || || | || |||||||| || || ||||| ||||| || Sbjct 888178 GACTCCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCC 888227 >seq19 Length=2947477 Score = 125 bits (138), Expect = 9e-24 Identities = 143/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || |||||||| || || || ||||| || ||||| ||| | ||| Sbjct 340748 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGCCCTCA 340689 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || | || || || | || || |||||||| || |||||||| || || || || ||| Sbjct 340688 GATTCCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 340629 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || |||||||||||||| | || | |||| ||||| Sbjct 340628 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCAGGACATTGTCTGACTACAAT 340569 Query 172042 GTTCA-AAAGG 172051 |||| ||||| Sbjct 340568 ATTCAGAAAGG 340558 >seq11 Length=3525032 Score = 114 bits (126), Expect = 2e-20 Identities = 168/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| ||||| || || ||||| ||||||| |||| | || || || || || ||||| | Sbjct 608840 ATGCTGTTGTCACCGTCCCTGCCTACTTCAATGATGCCCAGCGTCAAGCAACCAAGGATG 608899 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| | | || | || || || | | | ||||||||||| || || || ||||| | Sbjct 608900 CTGGTACCATCTCTGGCCTGAATGTTATGCGTATTATCAATGAGCCTACTGCTGCTGCTA 608959 Query 195828 TTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCG 195887 |||| || || |||||||| | | |||| || ||||| | | || ||||| | Sbjct 608960 TTGCCTACGGGTTGGACAAGCGTGAAGGCGAA---AAGAATGTCCTTGTTTTCGATCTTG 609016 Query 195888 GTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAA 195944 | |||||||| ||||||||||| || || | ||||| |||| | || || |||| Sbjct 609017 GCGGTGGTACTTTTGATGTCTCCCTGCTGACCATTGATAATGGTGTCTTTGAGGTAA 609073 >seq326 Length=250163 Score = 100 bits (110), Expect = 4e-16 Identities = 229/342 (67%), Gaps = 21/342 (6%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 || |||||| | || |||||| | | ||||| | | |||| || || ||| | ||| Sbjct 174782 AAAATGAAGAAAACAGCGGAAGACTACTTGGGTGAGCCAGTGACTGAAGCCGTTATCACT 174841 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 ||||| || ||||||| ||| | ||||| || || || || || |||| ||| || Sbjct 174842 GTACCGGCATACTTCAACGATGCGCAACGTCAAGCAACTAAAGATGCTGGCCGTATCGCA 174901 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || | | | || ||||| ||||||||||| || || | || ||||| | Sbjct 174902 GGGTTAGAAGTTAAGCGTATCATCAACGAACCAACAGCCGCAGCGCTGGCGTATGGCTTA 174961 Query 195842 GACAAGAACAAGGACGAAGATAAAAATG-TATTGATCTTT--GATCTCGGTGGTGGTACG 195898 ||||| ||| |||| ||| | ||| | ||| || | ||||||||||| Sbjct 174962 GACAA-----AGGT-GAAGGTAACCGTACTATCGCGGTTTACGACTTAGGTGGTGGTACT 175015 Query 195899 TTTGATGTCTCACTTCTCAATAT---------TGAAGGTGGTATA---TTCGAAGTAAAG 195946 |||||| ||||| | || | || ||| |||| | | ||||||||| Sbjct 175016 TTTGATATCTCAATCATCGAGATCGACGAAGTTGACGGTGAAAAAACCTTCGAAGTATTA 175075 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 || || |||||||||||| |||||||||||||||||||| Sbjct 175076 GCGACCAATGGTGATACTCACTTAGGTGGTGAAGATTTCGAT 175117 >seq63 Length=1439674 Score = 89.7 bits (98), Expect = 7e-13 Identities = 351/548 (64%), Gaps = 7/548 (1%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || ||||| || || || || ||||| || || || || ||||| | | || ||| Sbjct 446172 GGAATCGACTTGGGCACCACCTACTCCTGCGTGGGCGTGTGGCAGCAGGGCAAGGTGGAG 446113 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | || ||||| || ||||| || || || || || ||||| || || | Sbjct 446112 ATCATCGCCAACGACCAGGGCAACCGCACCACCCCTAGCTATGTGGCCTTCACCGACACC 446053 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || | || | || || || || || || ||||| || |||||||| | | || || Sbjct 446052 GAGAGGCTGATCGGCGACGCGGCCAAGAACCAGACCGCCATGAACCCCAAGGACACCGTG 445993 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 || ||||| ||||| || || || || || || || |||| | || || Sbjct 445992 TTCGACGCCAAGCGACTCATCGGGCGGCGCTTCGACGACCCCAAGATCCAGGCTGACATC 445933 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGT-GTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| | ||| | | || | || | ||| ||||| | ||| | ||| Sbjct 445932 AAGCAGTGGCCCTTCAGCGTCATCAGCGACAGCGGC----AAGCCCAAGATCCAGGTTAC 445877 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 ||| | |||||| || || | || || || || || |||||| ||| || Sbjct 445876 ATTCAAGGGTGAGCGCAAGGTGTTCTCCCCGGAGGAGATCAGCTCCATGGTGCTGACGAA 445817 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||||||||||| || || | | | |||| | || || || || || || || || Sbjct 445816 GATGAAGGAGACGGCCGAGGCGTACCTGGGCAGCACGGTCCGGGACGCGGTGGTCACCGT 445757 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 || || ||||||| || || || ||||| || |||||||| | | || ||||| Sbjct 445756 GCCCGCCTACTTCAACGACAGCCAGCGCCAGGCCACCAAGGACGCGGGCGTCATCGCGGG 445697 Query 195784 TCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 || ||| ||| | || || ||||| || || || || || || | || || || |||| Sbjct 445696 GCTCAAC-GTCATGAGGATCATCAACGAGCCCACGGCCGCGGCGCTGGCCTACGGCCTGG 445638 Query 195843 ACAAGAAC 195850 |||||||| Sbjct 445637 ACAAGAAC 445630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657810897597360