Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq43 100 4e-16 >seq43 Length=2082672 Score = 100 bits (110), Expect = 4e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || ||| | ||||| || || ||||| | ||||| ||| || Sbjct 901073 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTGGAAGTTGAACCCTC 901132 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| ||||| || ||||| ||||| ||||||||||| || ||||| || Sbjct 901133 TGATTCTATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGCATCCCCCCAGATCA 901192 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||| || |||||||| |||||| | || || || || || || Sbjct 901193 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCTGACTACAA 901252 Query 156002 TAT 156004 ||| Sbjct 901253 TAT 901255 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 155895 AACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATT 155954 ||||| || ||| || || |||||||| ||||| || ||||| || || |||||||| Sbjct 900918 AACGTCAAGGCTAAGATCCAGGATAAAGAGGGCATCCCCCCAGACCAGCAGAGATTGATC 900977 Query 155955 TATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 | ||||||||||||||| |||||| | | ||||| || || || ||||| Sbjct 900978 TTTGCCGGTAAGCAGCTTGAAGATGGCCGTACTTTGTCTGACTACAATAT 901027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731814703570800