Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq43 105 1e-17 seq93 102 1e-16 >seq43 Length=2082672 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 || || || | ||||||||| | ||| || ||||| || || || || | || | Sbjct 901288 CGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCA 901229 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | || || |||||||| || || | ||| || || || || || |||||||| Sbjct 901228 TCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGGATGCCTTCTTTG 901169 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| ||||| || |||| ||| || | ||| ||||| ||||||||| Sbjct 901168 TCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACTTCCAGAGTAATG 901109 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| | ||| || | || ||||||||| Sbjct 901108 GTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATT 901073 >seq93 Length=974399 Score = 102 bits (112), Expect = 1e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39159 GATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAAT 39218 || || || ||||| || || || | |||||||| | |||||||| |||||||| || Sbjct 914638 GAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCTTAAGCCAGAAA 914697 Query 39219 ATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTT 39278 || | ||||| || | ||| ||||| |||||||||||| ||||| || |||| || Sbjct 914698 ATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGGCAATTA--CTC 914755 Query 39279 GCTC--CAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttt 39336 |||| ||||| | |||| |||||| || ||||||||||| || || || | Sbjct 914756 GCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCGGCCTTCTTCT 914815 Query 39337 tGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 | | | | || | |||| || || |||||||| Sbjct 914816 TCACACATGGGAGTGTTTCAATGGCATTAAATAA 914849 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 |||||||| || || ||| |||||| || || ||||| ||| || || ||||||| Sbjct 914980 TACATTTCTGAGTGAACATTTTCCATTGCAATCTGAAAGCCATAGAAGCACCGTGCTTCT 915039 Query 39480 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 39539 | ||||||||| | ||||| ||| ||||| || ||| ||||| |||||||| Sbjct 915040 GTTACCTGAACTTCTTGACTGAATCTTTCCACTAAGTTTTCATTGACAATCCCATCAGAA 915099 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCAT 39582 || || ||||| || | |||| ||||||||||| |||| Sbjct 915100 GCAGCAAAGAAGGCAAGGACATGGGAGATAAAATGTTTCTCAT 915142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905065139165400