Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq122 484 3e-132 >seq122 Length=4874392 Score = 484 bits (536), Expect = 3e-132 Identities = 679/947 (72%), Gaps = 12/947 (1%) Strand=Plus/Plus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 ||||||||||||||| | || ||||| || ||||| || || |||||||| ||||| Sbjct 3304325 GCCATCAACTGGAACAACATCGAAGACGAGAAAGATCTGGAAGTGTGGAACCGCCTGACC 3304384 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385 | ||||||||||||||| || ||| | || | || ||||| || ||||| ||| | | Sbjct 3304385 AGCAACTTCTGGCTGCCGGAAAAGGTACCGCTGTCTAACGATATTCCGGCGTGGAACTCC 3304444 Query 59386 CTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGAC 59445 |||| | || |||||| || || || || || ||||||||||||||| ||||||| Sbjct 3304445 CTGAATGCCGATGAGCAACAGCTGACCATCCGCGTGTTCACCGGCCTGACGCTGCTCGAT 3304504 Query 59446 ACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGAG 59505 || |||||| |||| | || ||| | ||||| | || ||| | |||||||| || Sbjct 3304505 ACCATCCAGAACACCCTCGGCGCTCCGGCGCTGATGGCCGATGCGCTGACGCCGCATGAA 3304564 Query 59506 GAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAAC 59565 ||||| ||| |||||||| || ||||| ||||||| || |||||| Sbjct 3304565 GAGGCCGTGATGTCGAACATCAGCTTTATGGAAGCGGTGCATGCCCGCTCATACAGCTCG 3304624 Query 59566 ATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGAG 59625 |||||||| ||||||||| ||| || | || || || | | |||| || ||| Sbjct 3304625 ATCTTCTCCACGCTGTGCCACACCAGCGATGTTGATGCCGCCTACGCCTGGAGCGAAGAG 3304684 Query 59626 AATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCCG 59685 ||||| ||||| |||||||| ||||| | ||| | ||||| | | |||| ||| Sbjct 3304685 AATCCCCCGCTGCAGCGCAAGGCCGAGATCATTCTGCAGCACTACTACGAGAACGACCCG 3304744 Query 59686 CTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTAC 59745 || ||| |||| | ||| ||| || || ||||||||||||||| ||||||||| Sbjct 3304745 CTAAAGAAGAAGATCGCCAGCGTGTTCCTCGAATCGTTCCTGTTCTACTCCGGCTTCTAC 3304804 Query 59746 CTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGCTC 59805 ||||||||||||||||| || || || |||||||| ||||| ||||| ||||||| || Sbjct 3304805 CTGCCGATGTACTGGTCGAGCCGCGGCAAGCTGACTAACACCGCCGATCTGATCCGTCTG 3304864 Query 59806 ATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCCTG 59865 || || || |||||||| ||||| ||||||||||| ||||||| ||| | |||| Sbjct 3304865 ATTATCAAAGATGAGGCGGTTCACGGTTACTACATCGGCTACAAGTATCAGAAAGCCCTG 3304924 Query 59866 GAGACTCAGAACGAGGCTCGCCGC-----GAGGAGCTGAAGGACTACACGTACGGTCTGC 59920 || | ||| || || ||| || ||||||||| | | | | | | |||| Sbjct 3304925 GAAA--AAGA--GACGC-CGCAGCGTAAAGAGGAGCTGCAACAGTTCGCCGTTGAACTGC 3304979 Query 59921 TACTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGAC 59980 | || | | |||| || || || ||||| || || | | ||||||| ||||| || | Sbjct 3304980 TGCTGGCGCTGTATGAAAATGAAATTGAATATACCGATGCGCTGTACGCAGGCGTCGG-C 3305038 Query 59981 TGAC-TGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTC 60039 || | || || || || | |||| ||| ||||| || ||||||||||||||||| ||| Sbjct 3305039 TGGCAGGAAGAGGTGAAAAAGTTCTTGCATTACAATGCTAACAAGGCGCTGATGAACCTC 3305098 Query 60040 GGCTACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCA 60099 |||||||||||||||||||| || ||||| || || |||| ||| | |||| Sbjct 3305099 GGCTACGAGGCGCTGTTCCCCTCTGAGATGACCGATGTTAACCCGGCTATCCTCTCGGCG 3305158 Query 60100 CTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTG 60159 ||||| || || || || ||||||||||||||||| ||||| ||| | | |||||| Sbjct 3305159 CTGTCGCCAAACGCCGATGAAAACCACGACTTCTTCTCCGGCTCCGGCTCCTCCTATGTG 3305218 Query 60160 ATTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCTAGTC 60206 || || || || | | ||| ||||| || || ||| |||| || || Sbjct 3305219 ATGGGTAAAGCGGTCGATACCGAAGATGAAGACTGGAACTTTTAATC 3305265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258911435700588