Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq45 93.3 1e-13 seq353 84.2 6e-11 >seq45 Length=1811775 Score = 93.3 bits (102), Expect = 1e-13 Identities = 183/269 (68%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 155474 TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTC 155533 ||| ||| | ||||||||||| || ||||| | ||| | || ||| || || || Sbjct 849763 TGGATAATAGTTCACATCAATTATTTTATTCAGGTTTTTGGTCACAGTCTTTGTCACCTC 849822 Query 155534 TGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGA 155593 | | || ||| |||| | ||||| || || |||||||| || ||| || Sbjct 849823 TTTCAGCTTTACAAAGTCGTAGGTTTTGTCAGGCTTCACAAACATGTTAACGGCAACTGA 849882 Query 155594 CGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTCACAGCAC 155651 |||| |||||| || ||| | || ||||| || | || || ||||||||| ||| Sbjct 849883 TGCCAAATTACAAACAGCAATTTC--TGTCGGCGAGGAATACTCAACAATCTCAGTGCAA 849940 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 || || || || || || |||| ||||| ||| || ||||| | ||| |||||||| Sbjct 849941 AGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCGGTTGCAAGCATCT 850000 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTC 155740 ||||| | ||||| || || || || || Sbjct 850001 TTGTACAACATGTAAGGTGTGCCAGTTTC 850029 Score = 84.2 bits (92), Expect = 6e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || ||||| || ||||| || ||| || || ||| | |||| ||||| ||||||||| Sbjct 850498 TTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATAATA 850557 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| || || ||||| || || ||||| || | |||| | ||||| Sbjct 850558 CCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATACAGTGAATG 850617 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 | | |||||||| || | | |||||||| ||| || || || | || | | || Sbjct 850618 TTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTCGTAA 850677 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 || ||||||||| |||||||| ||| || || || |||| Sbjct 850678 ATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCA 850718 >seq353 Length=351880 Score = 84.2 bits (92), Expect = 6e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 304030 AAGTTGGGGTCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAGA 304089 ||||| |||||||| ||||| |||| |||||| ||||||||| || || ||||||||| Sbjct 339358 AAGTTTGGGTCAGGGGTAATGACAGTTCGAGCAGAAAAATCAACTCGTTTCCCCATAAGA 339417 Query 304090 TTACCCCTAACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGG 304145 ||||| | || | || | || || || || || | |||||||| ||||| || Sbjct 339418 TTACCACGAATTCTTCCTTCTTTTCCTTTCAGTCTGGCTTTGATTGCTTTCAGTGG 339473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471699494456631