Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq122 145 2e-30 >seq122 Length=4874392 Score = 145 bits (160), Expect = 2e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||| ||| | |||||||| || || || || ||||| ||||| || ||||| | Sbjct 543608 GAAGTCGACGTCAAAGTCGGGCATCGAAACACGTTCCGGGTTGAGGAAACGTTCGAACAG 543549 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || | ||||||||||||||||||||| || || ||||||| ||||| ||||| Sbjct 543548 CAGGTCAAACTCCAGCGGGTCGAGGTCGGTAATTTTCAGTGCGTAGGCCACCAGAGAACC 543489 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | || || || || || || || || |||| ||||||| ||| ||||||| Sbjct 543488 GGCACCGGAACCACGTCCCGGCCCCACGGGCACGTCGTTATCCTTCGACCACTGGATGAA 543429 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGT 40479 ||| |||| |||||||| |||||| ||||||||| |||||| || Sbjct 543428 TTCCATCACGATCAGGAAGTAGCCCGGGAAGCCCATCTGGTTGATCACGT 543379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163312653024234