Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq122 251 2e-62 >seq122 Length=4874392 Score = 251 bits (278), Expect = 2e-62 Identities = 772/1172 (66%), Gaps = 45/1172 (4%) Strand=Plus/Plus Query 25512 TATCACCACGGCGTAACCGTCGTCGAAGATAACACCGGCGTCCGTCCGATCACCACGATC 25571 ||||||||||||||| |||||| ||| || ||| ||| || ||||| | Sbjct 199787 TATCACCACGGCGTACGCGTCGTTGAAATCAATGACGGAACCCGCAGTATTTCCACGGTA 199846 Query 25572 TCGACGGCCGTTATCGGTGTCGTCTGTACCGGCGACGATGCCGACCCGATCACGTTCCCG 25631 || || | || |||| | ||||| || | | ||||| || | | | |||||| Sbjct 199847 TCCACTTCTATTGTCGGCATGGTCTGCACTGCAGCGGATGCTGATGCCACCGTATTCCCG 199906 Query 25632 CTGAACAAGCCGGTGCTGCTCACGAACGTGCAGGCCGCGCTCGGCAAGGCGGGCCGAAAG 25691 || |||| |||||||||| | || |||||||||| ||| | || || || || | Sbjct 199907 CTCAACACGCCGGTGCTGATTACCGACGTGCAGGCGGCGGTGGGGAAAGCCGGTGTCAGC 199966 Query 25692 GGCACGCTGTACACGACGCTCGATGCGATCCAGAAACAG-GCCCGCCCGTACACCGTCGT 25750 ||||||||| | |||| | ||||| | ||| || ||| ||| || || || Sbjct 199967 GGCACGCTGGCGAAAGCGCTGCAGGCGATTGCCGACCAGAGCAAGCCGGTA-ACGGTGGT 200025 Query 25751 GGTGCGCGTCCCGCAAGGCAAGGATTCGGCGGAAACCACGTCGAA---CATTGTCGGCAC 25807 ||||||||| | | || | || |||| |||||| || ||| | ||||| Sbjct 200026 GGTGCGCGTTGAGGAGGGTGAAGACGAAGCGGCAACCACCAGCAATATCATCGGCGGCAG 200085 Query 25808 CGTGAATGCCGACGGCACGAAAACCGGGCTCAAGGCGCTCGAATCGGCGCCGTCCGTGGT 25867 || |||| ||||| | |||||| | || ||||| |||||| | ||| | Sbjct 200086 CG---ATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGCGCAGACCGACCT 200142 Query 25868 GCAGGTGAAGCCGCGGATTCTGGCGGTTCCGGGGCTCGATACGCAGCCCGTCGCGAACGC 25927 || |||||||| ||||| | || |||||||| ||| ||| | || || | ||| Sbjct 200143 TGGCGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGGAAGTGGCCACCGC 200202 Query 25928 GCTGGCATCCACCGGGCAACTGCTGCGTGCGATGGCGTACGTCGCGGCTCGCAACGAGAC 25987 |||||| | | | | || | |||||| || | | || || ||||| | | | Sbjct 200203 GCTGGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATATCTCGGCTTAC-----GGC 200257 Query 25988 GGGGGAACTGGTCGCCACGCAGGAAGAGGCGGTGGCCTACCGGAAGAAGTTCGGTCAACG 26047 | ||| ||| | || || ||| | || || | || ||| | || || Sbjct 200258 TGTAAAAC-GGT----AAGC-----GATGCGCTCAAGTATCGCGAAAACTTCAGCCAGCG 200307 Query 26048 CGAAGTGATGGTGATCTGGCCGGATTTCGTCGCATGGGACGACGCCGCGTCGAAAGAGGT 26107 ||| |||||||||||||||| || || ||||| ||| || ||| | | | | || Sbjct 200308 CGAGCTGATGGTGATCTGGCCCGACTTTGTCGCCTGGAACA---CCGTGACCAGCGCGGC 200364 Query 26108 TGAAG-TGCCC--GCCGTAGCGTATGCGGTCGGCCTGCGCGCGAAGATCGATCAACAAAC 26164 ||| |||| ||| || || ||||||||||||| || |||||| | | | Sbjct 200365 GGAAACTGCCTATGCCACCGCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGACAG 200424 Query 26165 CGGCTGGCATAAGACGCTCTCGAACGTCGCTGTGAATGGCGTCGAAGGGA---TCAGCAA 26221 |||||||||||| || || |||||||||| || || ||||| || || || || Sbjct 200425 CGGCTGGCATAAAACCCTGTCGAACGTCGGCGTCAACGGCGT-GACCGGCGTTTCCGCCT 200483 Query 26222 GCCGGTTTCGTGGGATTTGCAGAACCCGGCGACCGATGCGGGTTTCCTCAACGAGAATCA 26281 |||| | ||||| ||||| | || ||||||||| | | | || || || | || Sbjct 200484 --CGGTATTCTGGGACCTGCAGCAGGTGGGGACCGATGCCGATCTGCTGAATGA-AGCCA 200540 Query 26282 G-GTCACGACGCTGATCAACCGGAACGGCTTCCGATTCTGGGGCTCGCGCACGGCGTCCG 26340 | ||||| ||||||||| | |||| ||||| ||||||||| ||||| || Sbjct 200541 GCGTCACCACGCTGATCCGCAAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCG 200600 Query 26341 ACGATCCGCTGTTCGCGTTCGAAAACTACACGCGCACGGCGCAGGTGCTGGCCGATACGA 26400 | || ||||||||||| || ||||||||||| ||| ||||||||||| | ||||| || | Sbjct 200601 ATGACCCGCTGTTCGCCTTTGAAAACTACACCCGCTCGGCGCAGGTGATCGCCGACACCA 200660 Query 26401 TGGCCGAAGCACAGATGGTCGTTATCGACGGCGCGATGATTCCGGCGCTACCGCGCGACG 26460 ||||||| || || ||| | | |||| || ||| ||| |||| ||||||| Sbjct 200661 TGGCCGATGCGCATATGTGGGCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACA 200720 Query 26461 TGATCGAGGGCATCAACGCAAAAATGCGTGAAATGAAAACCAAGGGCCAGTTGATCGGCG 26520 | |||| || |||||||| || | ||||| ||| | | || | || | |||| Sbjct 200721 TTATCGCCGGGATCAACGCCAAGTTCCGTGAGCTGATCAACGCCGGTTATCTGCTGGGCG 200780 Query 26521 GC-TCGGCGTGGTTCGACGCGGAACAG--AACGGCGTTGTGGCGCTGAAAGATGGCAAAG 26577 | | || |||| ||| || || | ||| || | | ||||||| ||| ||| Sbjct 200781 CCAACTGC-TGGTACGA--CGAAAGCGCCAACAGCCAGGAGAGCCTGAAAGCCGGC-AAG 200836 Query 26578 CGGT-GATCAATTACGACTACACGCCGGTGCCCCCGCTGGAAAACCTCACGCTGCGCCAG 26636 | || ||| | |||||||| || |||||||| ||||||||| | || || ||||| ||| Sbjct 200837 CTGTATATCGACTACGACTATACCCCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAG 200896 Query 26637 AAGATCACCGACCAGTATCTGGCCGATTTCGC 26668 || |||||| || ||||| | ||||| Sbjct 200897 CGCATTACCGACAGCTACCTGGCGAACTTCGC 200928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113245976916352