Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq122 248 1e-60 seq83 206 3e-48 >seq122 Length=4874392 Score = 248 bits (274), Expect = 1e-60 Identities = 435/626 (69%), Gaps = 22/626 (4%) Strand=Plus/Plus Query 41641 TAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTC 41700 |||| | ||| | || ||||| |||||| | || ||||| || || ||||| ||||| Sbjct 2805867 TAAGATTTCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAG 2805926 Query 41701 CAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT-- 41758 | |||||| ||||||| | || || || | ||| | || || ||||| Sbjct 2805927 CTCCTGCGTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCC---ACCTCCAG 2805983 Query 41759 -GCGATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCG 41817 ||||| |||||||| |||| || ||||| |||||||| | |||||||| | || || Sbjct 2805984 CGCGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCG 2806043 Query 41818 CGCGATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTG 41877 ||| |||| ||||| || ||||||||| | || || ||| || ||||||| Sbjct 2806044 TGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTA 2806103 Query 41878 GAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGC 41937 || || | ||||| ||||| || ||||| || || || || || || || ||||| || Sbjct 2806104 TAAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGC 2806163 Query 41938 AACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAA 41997 || ||| || || || |||||| ||||||| |||| ||||||||| ||||| ||||| Sbjct 2806164 GACCCTGTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAA 2806223 Query 41998 CAAAGGTGTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTT 42057 | || |||||| |||||| | ||||| |||| || ||||| ||||| ||| | | Sbjct 2806224 CCGCGGCGTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCT 2806283 Query 42058 GATGTATAAACGTTTGATGAATAACGATTACATCACTCTGTTCAGCC---CTGATGTTGC 42114 ||||||| | || || |||| || | || ||||||||||||| | || | ||| Sbjct 2806284 GATGTATCAGCGCCTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCGTCCGACG-TGC 2806342 Query 42115 TAACGATCGTCTGTATGATGCGTTCTATCAAGCGGATCAGACTGAATTCGAAGAACTGTA 42174 | | ||||||| ||||||| || || |||||| ||| || || ||||| Sbjct 2806343 -----CTGGCTTGTATGACGCGTTCT-TC--GCCGATCAGGATGAGTTTGAGCGCCTGTA 2806394 Query 42175 TACCAGCCTTGAAAAAGACCCGACTG--TACGCAAGAAACGTATTAAAGCGGTAGATCTG 42232 |||| || ||||| |||| | | |||||| | || | || |||||||||||| Sbjct 2806395 CACCAAATACGAGAAAGA--CGACAGCATCCGCAAGCAGCGCGTGAAGGCGGTAGATCTG 2806452 Query 42233 TTCCAGTTGCTTGCACAGGAACGCGC 42258 ||| | || | ||||||||||| Sbjct 2806453 TTCTCGCTGATGATGCAGGAACGCGC 2806478 Score = 188 bits (208), Expect = 8e-43 Identities = 618/941 (66%), Gaps = 37/941 (4%) Strand=Plus/Plus Query 152270 CAACGAGAACGCGAACAAAGAT-GCAAGGGTATTCCCGACACAGCGCGATTTGCTGGCGG 152328 ||| || || || || || ||| |||||| || ||| || ||||||||| ||||||| | Sbjct 3819927 CAATGAAAATGCCAATAAGGATAGCAAGGTGATCCCC-ACTCAGCGCGATCTGCTGGCCG 3819985 Query 152329 GTATCGTAGCGAAGCATTTCGCCCGTAATCATATCCTCCCGAAACATATCGTAGAAGCGC 152388 | ||||| || || || | ||||||| | ||||| || ||| || | || || | Sbjct 3819986 GGATCGTCGCCAAACACTACGCCCGTCAGCATATGCTGCCGCGTGATGTGGTCAGCGCCC 3820045 Query 152389 ATGATTCCGGTGACATCCACTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTA 152448 |||| ||| || ||||||||||||||||| ||||| ||||| ||| || Sbjct 3820046 ATGAGCGCGGCGAGATCCACTATCACGATCTCGACTACTCGCCGTTTTTCCCGATGTTTA 3820105 Query 152449 ACTGCTGTCTGGTTGACCTGAAAGGTATGCTGGAGAACGGTTTTAAAATGGGTAACGCGG 152508 ||||| ||| | |||||| || |||||| | |||| || |||||||||||||| | Sbjct 3820106 ACTGCATGCTGATCGACCTGCGGGGCATGCTGACGCACGGCTTCAAAATGGGTAACGCCG 3820165 Query 152509 ACATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCAC 152568 | || ||||||||||| |||||| || ||||| ||| |||||||||| ||| | Sbjct 3820166 AGATCGAACCGCCTAAGTCGATCTCCACCGCCACCGCCGTCACCGCGCAGATCATCGCCC 3820225 Query 152569 AGATTGCCTCTCACCAGTACGGCGGGACAACCTTT--GCGAACGTGGATAAAGTGCTGGC 152626 || | ||| || ||||| || || ||| || || | | ||| |||||||||| Sbjct 3820226 AGGTCGCCAGCCATATTTACGGGGGCACCACCATTAACCGTA--TTGATGAAGTGCTGGC 3820283 Query 152627 TCCATACGTCGAAATGACATTCT-TCAAACATCTGCACGA-TGCTGAACATTACGGTATC 152684 || | ||| | ||| || || |||| | || | | || || | | || | Sbjct 3820284 GCCGTTCGTGG--ATGCCAGCCTGGCAAAACACCGCGCCACCGCCGACGA--ATGGCA-- 3820337 Query 152685 GAACACTATAATGATTATGTGTATGCGATTGAAAAGACTGAAAAAGATGTG-TATGATGC 152743 || | | | | | ||||| | || |||||||| ||| || || || Sbjct 3820338 GATTGC--CGACGCCGAAGCCTATGCCCGCGCGCGCACCGAAAAAGA-GTGCTACGACGC 3820394 Query 152744 GTTCCAGTCCTATGAGTATGAAGTAAACACCCTACATACTGCCAACGGACAAACCCCGTT 152803 || ||||| |||||||| || || || || || || |||||||| || || ||||| Sbjct 3820395 CTTTCAGTCGCTGGAGTATGAGGTCAATACGCTGCACACCGCCAACGGCCAGACGCCGTT 3820454 Query 152804 TGTTACCATCACTTTCGGTACTGGTACGAGCGATTATGAACGCATGATCCAGAAAGCGAT 152863 ||| ||| || ||||| || || ||| | ||| |||||||| | |||| Sbjct 3820455 TGTCACCTTCGGCTTCGGCCTCGGCACCAGCTGGGCAGCGCGCCTGATCCAGCAGTCGAT 3820514 Query 152864 CCTGAAAAACCGTATTCGCGGCCTTGGTAAAGAGGGTATTACTCCGGTATTCCCGAAACT 152923 |||| ||||| || ||| || |||||| | | ||| | || || || || || Sbjct 3820515 CCTGCGTAACCGCATCGCCGGGCTGGGTAAAAATCACAAAACTGCCGTGTTTCCCAAGCT 3820574 Query 152924 GGTTATGTTCATGGAAAAAGGAATTAACCTTGATCCAGAGGATCAAAACTATGACATCAA 152983 ||| | ||| || || | |||| || | || | ||| || || ||||| Sbjct 3820575 GGTGTTCGCCATCAAAGCCGGGCTGAACCACCGTCGCGGCGAGCCAAATTACGATATCAA 3820634 Query 152984 ACAACTTGCCCTGGAATGTGCTTCGAAACGCATGTACCCAGATATC----ATTA-GCGCA 153038 ||| || || ||||| || || |||||||||||||| |||||| |||| | || Sbjct 3820635 ACAGCTGGCGCTGGAGTGCGCCAGTAAACGCATGTACCCCGATATCCTCAATTATGACCA 3820694 Query 153039 TCTAATAACCGCCGTATCACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGT 153098 | | || | |||| |||| |||| | | | || ||||| || ||||| Sbjct 3820695 GGTGGT----GCAG-GTCACCGGTT----CGTT--TAAAACGCCAATGGGCTGCCGCAGC 3820743 Query 153099 TTCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTAATAACCTT 153158 ||||| |||||| || | || ||||| | | || | || || || ||||| || Sbjct 3820744 TTCCTCGGCGTGT---ATCAGGAGAACGGGGAACAGATCCACGAGGGGCGCAATAATATT 3820800 Query 153159 GGTGTGGTGACAATCAACCTCCCGCGCATTGCGATCGAAGC 153199 || ||| | | ||||||| ||||||||||| | ||||| Sbjct 3820801 GGCGTGATTAGCCTCAACCTGCCGCGCATTGCCCTGGAAGC 3820841 Score = 123 bits (136), Expect = 3e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 43427 TTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTG 43486 ||||||||||||| ||||| || || || ||||||||||| |||||||||||||| | Sbjct 2807744 TTTGAAAAGCTGATCGAAAAGCAGCTCTCTTTCTTCTGGCGCCCGGAAGAAGTGGACGTC 2807803 Query 43487 TCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAAATCATTTTCGATTCT 43546 ||| || ||||| | ||| | |||| || || |||||| ||| || Sbjct 2807804 TCGCGCGATCGTATTGACTATCAGGCGCTGCCAGAGCACGAAAAACACATCTTTATCAGC 2807863 Query 43547 AACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAACCTTGCATTT 43606 |||||| | ||||| || || ||||| | |||||||||||| |||| ||| | || || Sbjct 2807864 AACCTGAAGTATCAGACTCTGCTGGACTCTATTCAGGGACGCAGCCCGAACGTGGCGTTG 2807923 Query 43607 CTCCCGATTGCCTCTGATGTATCAA-TGGAAACGTGGATCGAAACATGGGCGTTC 43660 || ||| | ||| ||| || ||||||| ||||| ||||| ||||||||| Sbjct 2807924 CTGCCGCTGATCTC-GATCCCGGAACTGGAAACCTGGATTGAAACCTGGGCGTTC 2807977 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 40561 CGCGGGATCATCGTTTCCGCATGGAATCCGGTTGATCTTGATGCAATGGCTTTGCGTCCG 40620 ||| | ||||||||||| |||||||| | || || |||| ||||| || ||| Sbjct 3442467 CGCCGCATCATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCG 3442408 Query 40621 TGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAG 40680 || ||| |||||||||||| ||| |||| || || || || ||||||| Sbjct 3442407 TGCCACGCGTTCTTCCAGTTCTACGTTGCGGACGGCAAGCTCTCCTGCCAACTGTATCAG 3442348 Query 40681 CGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATAGCCTCATACGCTCTCCTGACG 40740 || || ||| ||||| | || ||||||||||||| ||| |||||| | ||| | Sbjct 3442347 CGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATCGCCAGCTACGCTTTGCTGGTG 3442288 Query 40741 CATATTATCGCTGATATTTGCGGGTATGAAGTAGGCGATCTGGTTTGGACTGGTGGTGAT 40800 ||||| || || | |||| ||||| || ||| | || ||||| ||||| ||| Sbjct 3442287 CATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGATTTTGTCTGGACCGGTGGCGAT 3442228 Query 40801 GTTCATATCTACA 40813 ||| | |||| Sbjct 3442227 ACCCATCTGTACA 3442215 >seq83 Length=912621 Score = 206 bits (228), Expect = 3e-48 Identities = 304/429 (71%), Gaps = 6/429 (1%) Strand=Plus/Plus Query 41648 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41707 || ||||||||||| || |||||||| || || || || || || || || | ||| Sbjct 579776 TCCTTACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGC 579835 Query 41708 GTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATC 41764 || | || || | || ||| | | ||| | || || || ||| || ||| Sbjct 579836 GTGCTTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCC---ACTTCTAGTGCTATC 579892 Query 41765 GTGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATG 41824 || || || |||||||||| || || |||||| | || || || | |||||| ||| | Sbjct 579893 GTTAAATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTA 579952 Query 41825 GGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACAT 41884 || |||||||||||||||||| | ||||| || |||||||||| ||||| Sbjct 579953 GGCAGCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACAC 580012 Query 41885 ATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTG 41944 | ||||| || || ||||| || || ||||| || || || || ||||| || || || Sbjct 580013 TTCCAGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTG 580072 Query 41945 TATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGT 42004 | ||| || || ||||| |||||| |||||| | | | || |||||||| ||| ||| Sbjct 580073 TTTTACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGT 580132 Query 42005 GTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTAT 42064 |||||| |||||| |||||||||| ||||| |||||||| | ||| | | |||||| Sbjct 580133 GTTGAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTAT 580192 Query 42065 AAACGTTTG 42073 ||||| || Sbjct 580193 CAACGTCTG 580201 Score = 154 bits (170), Expect = 2e-32 Identities = 297/436 (68%), Gaps = 18/436 (4%) Strand=Plus/Plus Query 42812 GACTGGGAATGGTTGCGTGGTGAAATCAAAAAATACGGCTTGCGTAACTCAACGCTTTCT 42871 || |||||| | || |||| |||||||| | | | ||||| ||||||||||||||||| Sbjct 580952 GATTGGGAAAGCTTACGTGAAGAAATCAAGACACATGGCTTACGTAACTCAACGCTTTCA 581011 Query 42872 GCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGTAACTCCACAAACGGTATTGAACCG 42931 || || ||||||| || | ||| || | ||| | ||||||||||| || || Sbjct 581012 GCATTGATGCCATCAGAAACCTCTTCGCAGATTTCTAATGCTACAAACGGTATCGAGCCT 581071 Query 42932 CCTCGCGGCCCTGTGAGTGTGAAATCTTCGAAGGAAGGTTCATTTAAC--CAGGTAGTTC 42989 || |||||| ||| ||| | ||| | ||||| || ||| |||| || ||||| |||| Sbjct 581072 CCACGCGGCTATGTCAGTATCAAAGCCTCGAAAGACGGT--ATTTTACGTCAGGTCGTTC 581129 Query 42990 CGAACCATAA----TGACCAGATTGATTTCTATGATTATCTCTGGACAATGGCTAAACGC 43045 | | || | | || |||| | |||| || ||| |||| || Sbjct 581130 CAGAGTATGAGCGCTTACAAGATCAGT----ATGAGCTGCTATGGGAAATGCCTTC---- 581181 Query 43046 GGTAACAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGACCAGGCTATC 43105 |||| | ||||| | | ||| | |||||||||||||||| ||||| |||||| Sbjct 581182 --TAACGATGGTTACTTACAACTTGTCGGGATTATGCAGAAGTTTGTCGACCAAGCTATC 581239 Query 43106 TCTGCAAACACCGACTATGATCCGGCTAACTATGCTGATGGTAAAGTTCCGACTGAGGAA 43165 ||| |||||||| |||| |||||| | || ||| || ||||| |||| || | Sbjct 581240 TCTTCAAACACCAACTACGATCCGACACGTTACACTGGCGGGAAAGTACCGATGCAGCAG 581299 Query 43166 ATCTTAGATGACCTCCTGTACGCGAACTATTTCGGTGTTAAAACACTGTATTACCACAAC 43225 | | | ||||| ||| |||| | | ||||| || ||||| || || || || ||| Sbjct 581300 TTACTGAAAGACCTGCTGACCGCGTATAAATTCGGCGTGAAAACGCTTTACTATCAAAAC 581359 Query 43226 ACCCGCGATGGTGCTG 43241 || || |||||||||| Sbjct 581360 ACGCGTGATGGTGCTG 581375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563754261632760