Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq122 118 2e-21 seq83 98.7 2e-15 >seq122 Length=4874392 Score = 118 bits (130), Expect = 2e-21 Identities = 150/203 (74%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 63873 GGTGAA--ATTCGACACACTGGTGTAATCCCATTCTGGAAACACTTTCAGACTGCTGTGA 63930 |||||| |||| |||| | | || | ||| |||| || ||||| ||||| || |||| Sbjct 2806069 GGTGAAGCATTCCACAC-CGGCTGCATTCCG-TTCTATAAGCACTTCCAGACCGCGGTGA 2806126 Query 63931 AGTCATGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGCTAACTTACCCGATTTGGC 63990 |||| || || || || || || || || ||||| || || || ||||| || |||| Sbjct 2806127 AGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGC 2806186 Query 63991 ATTTAGAAGTTGAAAAACTTTTGGTGCTGAAGAACAACAAAGGCGTTGAAGAAAACCGTA 64050 || | ||||| |||| || ||||||||||||||||| |||||||||| ||||| Sbjct 2806187 ATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCG 2806246 Query 64051 TTCGTCATCTTGACTACAGTGTG 64073 | |||||| | |||||| | ||| Sbjct 2806247 TGCGTCATATGGACTACGGCGTG 2806269 Score = 95.1 bits (104), Expect = 2e-14 Identities = 230/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 173221 TGGAAAGAACTGACTGGTTACGGATTTAGTCTGTACAGCACACCAAGCGAATCGCTATGT 173280 ||||| || ||| | ||||| || || ||||||||||| || |||||| || || Sbjct 3821176 TGGAAGGAGGAGACCGACTACGGCTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGC 3821235 Query 173281 GATCGTTTCTGTCGTCTTGATCAAGAGAAGTACGGTATCATTACTGGTATCAATGACAAA 173340 || || ||||| || || || | | | || | | | || ||| |||||| Sbjct 3821236 GACCGCTTCTGCCGCCTCGACGCCGCCGAATTTGGCGTGGTGCCGGGCGTCACCGACAAA 3821295 Query 173341 GACTACTATACAAACTCGTTCCACTTAGACGTATTCAAGAAAGTGAATCCGTTCGAGAAG 173400 | ||||| || ||| |||||| | ||||| || || || ||||||| ||| || Sbjct 3821296 GGTTACTACACCAACAGCTTCCACCTCGACGTTGAGAAAAAGGTTAATCCGTACGACAAA 3821355 Query 173401 ATTGACTTTGAAGCATCGTACCCAGCATAT-GCAAACGGCGGTTTCATTTGCTATGCAGA 173459 || ||||||||||| || || || || || ||||||||||| || ||||| | || Sbjct 3821356 ATCGACTTTGAAGCGGGCTATCC-GCCGATCGCCAACGGCGGTTTTATCTGCTACGGCGA 3821414 Query 173460 GTTCCCGAACATGCGCGACAATATCAAAGGTCTAGAACGTGTATGGGATTA-TGCTCATA 173518 || |||||| || | | || | || | || || || |||||||| ||| | | Sbjct 3821415 GTACCCGAATATCCAGCATAACCTGAAGGCACTGGAGGACGTCTGGGATTACAGCT-ACA 3821473 Query 173519 GCAAAGTTGCTTACTTCGGTACAAACACACCGATTGATCAATG 173561 || || | || | ||| || ||||| ||||||||| |||| Sbjct 3821474 GCCGCGTGCCCTATTACGGCACCAACACCCCGATTGATGAATG 3821516 >seq83 Length=912621 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 237410 AACTTTCCTAAGTGTACTGCAATCGACAACAAGATGAACTACGATGAGATTGTATGTGAA 237469 ||||| || ||| ||||| ||||| ||||||||||| |||||||| || | Sbjct 522945 AACTTCCCAAAGATTACTGTTATCGAAAACAAGATGAATGTTGATGAGATGGTTACCGTG 522886 Query 237470 ACTGGTATTAC--TGTCATGTCGCAGTGTGAACATCACTTCGTGACAATTGATGGTAAAG 237527 || |||||| || | || | ||||||||||| || ||||| || || ||||||| Sbjct 522885 CGTGATATTACGCTGACCAGTACC--TGTGAACATCATTTTGTGACCATAGACGGTAAAG 522828 Query 237528 CAACAGTTGCTTACATCCCTAACAAGAAAGTTCTTGGCTTGTCTAAGATGAATCGCATTG 237587 | ||||| || || ||||| || | ||||| |||| | || || || || || |||| Sbjct 522827 CGACAGTGGCCTATATCCCGAAAGATAAAGTGATTGGTCTATCGAAAATCAACCGTATTG 522768 Query 237588 TTGAGTATTTCAGTCG-TCGCCCTCAAGTGCAAGAGCGTTTAAC 237630 | | | ||| | || ||||||||||| ||||| || ||||| Sbjct 522767 TGCAATTCTTC-GCCGAGCGCCCTCAAGTACAAGAACGCTTAAC 522725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791845203565080