Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq122 248 1e-60 seq83 196 7e-45 >seq122 Length=4874392 Score = 248 bits (274), Expect = 1e-60 Identities = 401/576 (70%), Gaps = 8/576 (1%) Strand=Plus/Plus Query 87537 GAAACGAAAAATCTTATCTTCGCCACCGGCGAAGCGGGGTGTGGGAAAACGTTTATTTCC 87596 ||||| || | || |||||||| || |||||||| || ||||| ||||| | || | Sbjct 1498066 GAAACCAAGCAACTGATCTTCGCTACGGGCGAAGCAGGTTGTGGTAAAACCTGGATCAGC 1498125 Query 87597 GCCGCATACGCTTGCGAACGTTTGCTGGCCAAAGATATCGAACGTATCATCGTCACTCGT 87656 |||||| | || ||| || | || ||| | || | || || || ||||| Sbjct 1498126 GCCGCAAAAGCGGCCGAGGCCCTGATTCATAAGGATGTTGACAGGATTATAGTGACTCGC 1498185 Query 87657 CCGGTGCTCTCCGCAGATGAAGATTTAGGCTTCCTGCCCGGCGACGTTGCCGAAAAATTC 87716 ||||| || || ||||| ||||| || ||||| || || || | | ||||||||| Sbjct 1498186 CCGGTACTTCAGGCGGATGAGGATTTGGGATTCCTTCCAGGGGATATCTCAGAAAAATTC 1498245 Query 87717 GCCCCGTACTTCCGCCCTGTTTATGACGTTCTTCAAAAACGTCTCGGTAGCCGCTACC-- 87774 |||||||| ||||| || || ||||||||||| |||||||| || | || || Sbjct 1498246 GCCCCGTATTTCCGGCCGGTATATGACGTTCTGGTTAAACGTCTTGG----CTCTTCCTT 1498301 Query 87775 --TGCAATACTGCCTTAAGCCCGGTATCGACAAAGTGGAGATTGCTCCTTTTGCGTACAT 87832 |||| |||||||| |||| || | ||||||||| ||||| || ||||| || || Sbjct 1498302 TATGCAGTACTGCCTGCGTCCCGAAATTGGCAAAGTGGAAATTGCGCCGTTTGCCTATAT 1498361 Query 87833 GCGTGGCCGCAGTTTCGAAAATGCGGTTGTCATTTTAGATGAAGCTCAGAACACTACTGC 87892 ||| ||||||| || ||||| || || || ||| | ||||| || |||||| || || Sbjct 1498362 GCGAGGCCGCACGTTTGAAAACGCCGTGGTGATTCTGGATGAGGCGCAGAACGTCACCGC 1498421 Query 87893 TCAGCAGATGAAGCTCTTCCTGACACGTATCGGGGAGAACTGTATCGTTATCGTAAACGG 87952 || |||||| | |||||||| || | ||||| ||| | ||| || || ||||| Sbjct 1498422 CGCCCAAATGAAGATGTTCCTGACGCGCCTTGGGGAAAACGTGACCGTCATTGTTAACGG 1498481 Query 87953 TGACGTCACACAGTGCGACTTGCCCAAAGGGGTGAAGTCTGGACTGGCCGACGCGTTGAC 88012 || |||| ||||| || || || || |||| || ||||| |||||| || | Sbjct 1498482 CGATATCACCCAGTGTGATTTACCGTCCCATGTTCAGTCCGGCCTGGCTGACGCGCTGTC 1498541 Query 88013 CCGTTTCGAGGAAGACGATTTAGTTGGCGTCGTTCGTTTTACGAAAGACGACTGTGTGCG 88072 || ||| |||| ||||| | || |||| || ||||| ||||| ||||| ||||| Sbjct 1498542 GCGCTTCCAGGACGACGAGATGGTGAGCGTGGTCCGTTTCGGAAAAGAGGACTGCGTGCG 1498601 Query 88073 CTCTTTGCTTTGTCAGCGTGCGTTGAAAGCGTACGG 88108 ||| ||| |||||||| || || || ||||| Sbjct 1498602 TTCTCAGCTCTGTCAGCGCACGCTGCTGGCTTACGG 1498637 Score = 221 bits (244), Expect = 2e-52 Identities = 229/298 (77%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 98895 ATGAAACAGTATCAAGATTTAATGGCTGAAGTCTTTGCGAAAGGTACGCCGAAGAAAGAC 98954 ||||||||||||| | |||||| | || | | | | || ||||| || || ||| Sbjct 3442842 ATGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGCAGGGCACGCCCAAAAATGAC 3442783 Query 98955 CGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAAGAA 99014 || ||||| || |||||||| || || || || || |||||||||||||| |||| || Sbjct 3442782 CGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAATCTGCAGGAC 3442723 Query 99015 GGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTGCTG 99074 ||||| |||||||| || |||||| ||||| |||||||||| || ||||| |||||| Sbjct 3442722 GGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCATGAGCTGCTG 3442663 Query 99075 TGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAAT--GGTGTAACCATTT 99132 |||||||| || || |||||||| ||| |||||||| || ||| ||||| | || | Sbjct 3442662 TGGTTCCTTAACGGTGACACCAACATCGCCTACCTGAAGGAAAATAAGGTGT--CGATCT 3442605 Query 99133 GGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 ||||||| ||||| || |||| || |||||||| ||||| || || || |||||||| Sbjct 3442604 GGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAACAGTGGCG 3442547 Score = 172 bits (190), Expect = 8e-38 Identities = 237/326 (73%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCG-TAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAA 99643 ||| | || || || || |||||||| | ||| || | ||| | || ||||||| || Sbjct 3442371 AAGCTCTCCTGCCAACTGTATCAGCGCTCCTGC-GATATCTTCCTCGGCCTGCCGTTCAA 3442313 Query 99644 CATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGTGG 99702 ||||| || ||| | ||| | || ||| | || |||||| |||| ||| |||| Sbjct 3442312 TATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACC-TGGAAGTGG 3442254 Query 99703 GCGATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCAC 99762 | ||||| ||||||||||| || ||| |||||||| ||||| ||||| ||| | | Sbjct 3442253 GTGATTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGC 3442194 Query 99763 GTACTCAGTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGG 99822 | ||| | || ||||| || |||| |||||||||||||| || ||||||| Sbjct 3442193 GCCTGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGG 3442134 Query 99823 ACTCTATCTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGG 99882 | ||||||||||||||| || || || || || |||||||| |||||||| || |||| Sbjct 3442133 AGTCTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGCATCCGG 3442074 Query 99883 CTATTAAAGCACCGGTGGCGATATGA 99908 | |||||||| ||||| || || ||| Sbjct 3442073 CCATTAAAGCCCCGGTCGCCATCTGA 3442048 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 99309 ATCGACCAGATTGCCAAAGTCATGGGCCAGTTGAAAAACGACCCGGATAATCGGCGTATC 99368 ||||||||| | ||| || | | ||| |||||| ||||||||| || || ||| Sbjct 3442518 ATCGACCAGCTGAGCAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGCATC 3442459 Query 99369 ATCGTTAGTGCATGGAACGTAGCTGACCTTGACGATATGGCCTTAGCTCCTTGCCACGCC 99428 |||||| |||||||||||| | || || || || ||||| | || || |||||||| Sbjct 3442458 ATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCACGCG 3442399 Query 99429 TTCTTCCAGTTTTA 99442 ||||||||||| || Sbjct 3442398 TTCTTCCAGTTCTA 3442385 >seq83 Length=912621 Score = 196 bits (216), Expect = 7e-45 Identities = 373/538 (69%), Gaps = 10/538 (2%) Strand=Plus/Minus Query 87544 AAAATCTT--ATCTTCGCCACCGGCGAAGCGGGGTGTGGGAAAACGTTTATTTCCGCCGC 87601 |||||| | || ||||| || ||||||||||||||||| ||||| | || |||| Sbjct 345617 AAAATCATTGATTTTCGCTACAGGCGAAGCGGGGTGTGGTAAAACTTGGATCAGTACCGC 345558 Query 87602 ATACGCTTGCGAACGTTTGCTGGCCAAAGATATCGAACGTATCATCGTCACTCGTCCGGT 87661 | || ||| || | ||||||||| || || ||||| || ||||| || || Sbjct 345557 TAAAGCCGCAGAAGCCTTAATTAACAAAGATATTGAGCGGATCATTGTGACTCGCCCAGT 345498 Query 87662 GCTCTCCGCAGATGAAGATTTAGGCTTCCTGCCCGGCGACGTTGCCGAAAAATTCGCCCC 87721 | | || |||||||| || || ||||| || |||||| || | |||||||| || || Sbjct 345497 GTTACAAGCCGATGAAGACTTGGGTTTCCTCCCTGGCGACATTTCTGAAAAATTTGCTCC 345438 Query 87722 GTACTTCCGCCCTGTTTATGACGTTCTTCAAAAACGTCTCGGTAGCCGC-TACCTGCAAT 87780 ||||||||||| || |||||||| | ||||| || || || | | |||| | Sbjct 345437 TTACTTCCGCCCGGTCTATGACGTATTAGTTAAACG-CTTGGGGTCCTCTTTTATGCACT 345379 Query 87781 ACTGCCTTAAGCCC-GGTATCGACAAAGTGGAGATTGCTCCTTTTGCGTACATGCGTGGC 87839 |||| ||| |||| | || | ||||| || ||||| ||||| || || ||||| ||| Sbjct 345378 ACTG-TTTACGCCCTGAAATTGCGAAAGTTGAAATTGCACCTTTCGCTTATATGCGGGGC 345320 Query 87840 CGCAGTTTCGAAAATGCGGTTGTCATTTTAGATGAAGCTCAGAACACTACTG-CTCAGCA 87898 | | || || ||||| | || ||| | |||||||| |||||| ||| | |||| || Sbjct 345319 AGAACCTTTGAGAATGCTTTCGTTATTCTTGATGAAGCGCAGAACGTTACCGCCTCA-CA 345261 Query 87899 GATGAAGCTCTTCCTGACACGTATCGGGGAGAACTGT-ATCGTTATCGTAAACGGTGACG 87957 ||||| | ||||| || || | |||||||| ||| | ||| ||||| |||||||| Sbjct 345260 AATGAAAATGTTCCTCACTCGCTTAGGGGAGAA-TGTGACCGTGATCGTTAACGGTGATA 345202 Query 87958 TCACACAGTGCGACTTGCCCAAAGGGGTGAAGTCTGGACTGGCCGACGCGTTGACCCGTT 88017 | || || || ||| | || ||| || || || || || || || ||| || |||| Sbjct 345201 TTACCCAATGTGACCTACCAGCAGGTGTTAAATCCGGGCTTGCTGATGCGATGCAGCGTT 345142 Query 88018 TCGAGGAAGACGATTTAGTTGGCGTCGTTCGTTTTACGAAAGACGACTGTGTGCGCTC 88075 | || || ||| | || || || || || ||| || |||||||| ||||| Sbjct 345141 TTTCTGATGATGATGTTGTCGGGGTGGTACGCTTTGGTGCTGAAGACTGTGTTCGCTC 345084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716580696296520