Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq122 154 4e-33 >seq122 Length=4874392 Score = 154 bits (170), Expect = 4e-33 Identities = 212/294 (72%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 33176 GAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCGGAAGTTAAATATA 33235 |||| | ||||||||||| | | || | ||| || || |||||||||||| || | Sbjct 4802030 GAGGCGTAAACAAAGTAATTTTAGTCGGAAATCTGGGGCAGGACCCGGAAGTTCGCTACA 4802089 Query 33236 TGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATA 33295 |||| |||||| || || ||| | ||||||| || || || ||| ||| Sbjct 4802090 TGCCGAATGGCGGTGCCGTTGCCAACATCACTCTGGCTACCTCCGAATCCTGGCGCGA-C 4802148 Query 33296 AAGCA-ACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAG 33354 ||||| || || |||| |||||| | || |||||||| ||||| || | ||||| ||| Sbjct 4802149 AAGCAGACCGGCGAAACCAAAGAGAAAACTGAATGGCACCGCGTTGTGCTGTTCGGCAAG 4802208 Query 33355 CTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAAA 33414 ||||| || ||||| || ||||||||||| |||||||||||||| ||| | ||||| | Sbjct 4802209 CTGGCTGAAGTGGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTATATCGAAGGCGCA 4802268 Query 33415 TTACGTACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACACTACTGAA 33468 | | || || |||||||| || || || ||||| || ||||| || ||| Sbjct 4802269 CTGCAGACCCGTAAATGGACTGACCAGGCTGGCGTTGAGAAGTACACCACCGAA 4802322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152033491953084