Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021772.1 Length=72394 Score E Sequences producing significant alignments: (Bits) Value seq122 113 2e-20 >seq122 Length=4874392 Score = 113 bits (124), Expect = 2e-20 Identities = 191/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 12385 TGAACCATTTGAATTGAAACCAGGTGAAACCAAGTTAATTGAAACTGGTTTGGCTATTCA 12444 |||| |||| | | |||| || |||| |||| | | | || || |||||||||| Sbjct 4496250 TGAAGCATTCGTACTGAATCCGGGTGCCACCACGCTGGTACCCACCGGCCTGGCTATTCA 4496191 Query 12445 TCTGGACGATGTACATGTAGCTGCAATGATTCTTCCTCGTTCAGGTCTAGGCCATAAACA 12504 | | | |||| | | || || |||| | || || || || || ||||||||||| Sbjct 4496190 TATCGCCGATCCTGAACTGGCCGCGGTGATCTTGCCGCGCTCTGGCCTTGGCCATAAACA 4496131 Query 12505 TGGTGTAGTGCTTGGGAACCTTACTGGTCTGATTGATTCAGATTATCAGGGTGAACTTAT 12564 || || || || || || || ||| |||||||| || ||||||||||| | || || Sbjct 4496130 CGGCGTGGTTCTGGGCAATCTGGTTGGCCTGATTGACTCTGATTATCAGGGGCAGCTGAT 4496071 Query 12565 GGTAAGCCTCTGGAATCGCTCTACAGAGCCTTTTACTGTTAACCCTGGTGACCGTATTGC 12624 ||| | ||||||| ||| || | |||||| | | ||||| || ||||| || Sbjct 4496070 GGTTTCCGTCTGGAACCGCGGGCAGGACTCCTTTACTATCGAGCCTGGCGAACGTATCGC 4496011 Query 12625 TCAGATGGTAATCGTGCCTGTAATGCAGCCTGAGTTC 12661 ||||||||| ||||||| || | ||| |||| ||| Sbjct 4496010 TCAGATGGTGTTCGTGCCGGTGGTACAGGCTGAATTC 4495974 Score = 93.3 bits (102), Expect = 2e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 68244 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTTATAGCTGTACGAGTTCG 68303 ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| Sbjct 1292628 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTTATGGCTGTGTGGGTTCA 1292687 Query 68304 AGTC 68307 |||| Sbjct 1292688 AGTC 1292691 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 68162 CCTTAGCTCAGCAGGATAGAGCAGTAGCCTTCTAAGCTATTGGTCACTGGTTCGAATCCA 68221 ||||||||||| |||||||||| ||||||||||| | |||||| ||||||||||| Sbjct 814344 CCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCCT 814403 Query 68222 GTAGGGTGTACCAAT 68236 |||||| |||||||| Sbjct 814404 GTAGGGCGTACCAAT 814418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231518326784765