Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021782.1 Length=72098 Score E Sequences producing significant alignments: (Bits) Value seq122 107 9e-19 seq109 82.4 4e-11 >seq122 Length=4874392 Score = 107 bits (118), Expect = 9e-19 Identities = 192/278 (69%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 7944 TGAACCATTTGAATTGAAACCAGGTGAAACCAAGTTAGTTGAAACTGGTTTGGCTATTCA 8003 |||| |||| | | |||| || |||| |||| | | || || || |||||||||| Sbjct 4496250 TGAAGCATTCGTACTGAATCCGGGTGCCACCACGCTGGTACCCACCGGCCTGGCTATTCA 4496191 Query 8004 TCTGGATGATG-TGAAGTATGCAGCAATGATTCTTCCTCGTTCAGGTCTGGGCCATAAGC 8062 | | | ||| |||| | || || |||| | || || || || || |||||||| | Sbjct 4496190 TATCGCCGATCCTGAACTG-GCCGCGGTGATCTTGCCGCGCTCTGGCCTTGGCCATAAAC 4496132 Query 8063 ATGGTGTAGTGCTTGGGAACCTTACTGGTCTGATTGATTCAGACTATCAGGGTGAACTTA 8122 | || || || || || || || ||| |||||||| || || |||||||| | || | Sbjct 4496131 ACGGCGTGGTTCTGGGCAATCTGGTTGGCCTGATTGACTCTGATTATCAGGGGCAGCTGA 4496072 Query 8123 TGGTAAGCCTCTGGAATCGCTCTACAGAGCCTTTTACTGTTAACCCTGGTGACCGTATTG 8182 |||| | ||||||| ||| || | |||||| | | ||||| || ||||| | Sbjct 4496071 TGGTTTCCGTCTGGAACCGCGGGCAGGACTCCTTTACTATCGAGCCTGGCGAACGTATCG 4496012 Query 8183 CTCAGATGGTAATCGTGCCTGTAATGCAGCCTGAGTTC 8220 |||||||||| ||||||| || | ||| |||| ||| Sbjct 4496011 CTCAGATGGTGTTCGTGCCGGTGGTACAGGCTGAATTC 4495974 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 63031 CCTTAGCTCAGTTGGATAGAGCAGTAGCCTTCTAAGCTATTGGTCACTGGTTCGAATCCA 63090 ||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||| Sbjct 814344 CCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCCT 814403 Query 63091 GTAGGGTGTACCAAT 63105 |||||| |||||||| Sbjct 814404 GTAGGGCGTACCAAT 814418 Score = 93.3 bits (102), Expect = 2e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 63113 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTTATAGCTGTACGAGTTCG 63172 ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| Sbjct 1292628 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTTATGGCTGTGTGGGTTCA 1292687 Query 63173 AGTC 63176 |||| Sbjct 1292688 AGTC 1292691 >seq109 Length=705085 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 63031 CCTTAGCTCAGTTGGATAGAGCAGTAGCCTTCTAAGCTATTGGTCACTGGTTCGAATCCA 63090 ||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||| Sbjct 321750 CCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCATAGGTTCGAATCCT 321809 Query 63091 GTAGGGTGTACCA 63103 ||||| |||||| Sbjct 321810 ATAGGGCGTACCA 321822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230571199084837