Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq83 331 2e-86 seq505 268 2e-67 seq411 87.8 5e-13 seq3091 80.6 7e-11 >seq83 Length=912621 Score = 331 bits (366), Expect = 2e-86 Identities = 596/865 (69%), Gaps = 16/865 (2%) Strand=Plus/Plus Query 39497 GTCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAAC 39556 ||||||||| |||||| ||||||||||| ||||| | |||||||| || || || || Sbjct 826195 GTCCGGCGACGTCGACATCGCCCAGCCCACCGGTTTACGGGCGAACAGATCCAGCACCAC 826254 Query 39557 GGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTG 39616 || ||||| ||||||| || ||||||||||| || ||||||||||||||||| ||| | Sbjct 826255 CGCCAGGTAAGCCCAGCTTTTTCCCGTCCAGATGTAAGTCACATCACCGCACCAGACCCG 826314 Query 39617 ATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATG 39676 ||| |||| ||| | || ||||| | || || | |||||||| ||| ||||| | Sbjct 826315 ATTAGGCTTGGTAAAAGCAAACTGGCGATCCAGATGATTAGGGATCTCAATGTGTTCCTT 826374 Query 39677 ACCACCACGT-TTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCA 39735 | || | | ||||| || || || | ||||||||||| | ||| ||| || Sbjct 826375 AG-ACGCCTTCTTATAACGATGGCCAGGTTTCTGACAGCTGATAATATTGAGCGCTTGCA 826433 Query 39736 TGAGCCTGCCAGCAAGCCAGCGTCCCA-TCTGGTAGCCTCTCCGGGTTGCCATTGTGGCG 39794 | ||| | || |||| || | || | | || ||| | | | |||| | ||| Sbjct 826434 TTAGCTTTGTTGCCCGCCAACGGCTCAGTTTTATA-CCTTTGGTGATGACCATCGCGGCA 826492 Query 39795 ATGCTTCTTGCTCCGGCCGAACCGTGGCTGATGCCATGTAGCTCAAGTACCTGACTGCGT 39854 ||||||| ||||| || || |||| || || || | ||| | || | ||| || Sbjct 826493 ATGCTTCGCGCTCCTGCTGAGCCGTTACTTTCGCGATAAACTTCACGCACAAGGCTGAGT 826552 Query 39855 AATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACGGTTTTTCCAGTATCTGTAGCTGCTG 39914 ||| | | | |||| | || | || | ||||||| | || |||||| Sbjct 826553 AATGTCACTCTCGTAGCGTCAAGCTTCTTGGGCTGCCG---CCAGTATTTATAACTGCTG 826609 Query 39915 CGATGAACCCCGAACACATGGCAGAGTGTGACCATAGGATAATGCGCTCTGAGTTTCCCG 39974 ||||||| ||| ||||| | || | | | | |||| | || | ||| ||||| | Sbjct 826610 CGATGAATCCCAAACACGTTGCCTACAACGGCAACAGGAAACCGCACCCTGTGTTTCTCA 826669 Query 39975 ATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTT 40034 | || ||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 826670 ACTAATGAGAATTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATAT 826729 Query 40035 CATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCG 40094 | |||||||||||| |||||| || ||||| | || ||||| |||||||| || || | Sbjct 826730 CCCTCTCCATTTCAACGCGTTGAAGTCTTTTCTTTAGGTCACGTATTTCAATCTGCTCAG 826789 Query 40095 GGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCC 40154 | || || || || || | |||| ||||||| ||||| || ||||||| | || Sbjct 826790 GTGTCATAGGTGAAGCAGTGGGTGATTTGCCCGCTCGCTCTTCTTTCAGTTGTCGAATCC 826849 Query 40155 ATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATT 40214 || | ||| ||||| || || | ||| || | | | | || || ||||| | Sbjct 826850 ATTTATCCATAGTGGATTTACCGACGTTCATTGCCGTAGTCGTGGCGGCAACGGTGTAAT 826909 Query 40215 TCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATT---TCttt 40271 ||| || | || || || || | |||| | ||| || | ||||||||| ||| | Sbjct 826910 GCTGATCGAGTACAAGCTGGGCAGCTTCGAGGCGAAATTCGGGGCTAAAATTGCGTCTGT 826969 Query 40272 t------tttCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGG 40325 | |||| ||||| | || | |||||||| ||||||||||| || ||| Sbjct 826970 TACGTCCGGTCATAATGTCACCTTTTTTACTGTGAGGTGATGATATCACCTCTATTTAGG 827029 Query 40326 TGGCCAAATTCAGTGTGCCACTTCA 40350 |||||||||| | ||| ||||| || Sbjct 827030 TGGCCAAATTTACTGTACCACTACA 827054 >seq505 Length=203535 Score = 268 bits (296), Expect = 2e-67 Identities = 554/815 (68%), Gaps = 31/815 (4%) Strand=Plus/Plus Query 39561 AGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTT 39620 || || ||||||| || ||||||||||||||||||||||| |||||||| ||||||| Sbjct 29923 AGATAAGCCCAGCATTTTCCCGTCCAGATATAGGTCACATCGCCGCACCAGACCTGATCC 29982 Query 39621 GGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCA 39680 ||| |||| || ||||| || | || || | ||| || || |||||||||| | || Sbjct 29983 GGCGCGGTAACTGCGAAATGGCGGTCGAGATGGTTCGGTATTTCAACATGTTCGTTCCCG 30042 Query 39681 CCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGC 39740 || ||||| || || | ||| ||| || ||| | | ||||||||||||| ||| Sbjct 30043 CCGCGTTTGTATTTATGCGCCGGTACCTGGCAACTGCCGATATCCAGCTCTTTCATCAGC 30102 Query 39741 CTGCCAGCAAGCCAGCGTCCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTT 39800 | || || ||||| || || | | ||| | | | |||| |||||||| ||| Sbjct 30103 TTACCTGCCAGCCATCGCCCGAGGCTGACGCCCTTGGCGCTAACCATCGTGGCGATACTT 30162 Query 39801 CTTGCTCCGGCCGAACCGTGGCTGATG--CCATGTAGCTCAAGTACCTGACTGCGTAATA 39858 || || || || || || ||| | ||| | ||| || | || ||| | Sbjct 30163 CTCGCACCAGCAGAGCCACCACTGGCGTTCCAG--ACTTCACTGACGGGGCTCCGTTTGA 30220 Query 39859 CAGCCCGTCTGCCGTCTGGTTTTTCAGGACGG----TTTTTCCA--GTATCTGTAGCTGC 39912 | || || ||| ||| || | || | |||||| | ||| | || |||| Sbjct 30221 CGGCACGCCTGGCGTGAGG------ACCACTGCTATTTTTTCGAATGTAGCGATAACTGC 30274 Query 39913 TGCGATGAACCCCGAACACATGGCAGAGTGTGACCATAGGATAATGCGCTCTGAGTTTCC 39972 | || ||||| ||||||| |||| | || | || |||||||||| || | Sbjct 30275 TTCGGTGAACACCGAACAGTCGGCACAATGGCGCTGCCGGGTAATGCGCTCCTAGACTGT 30334 Query 39973 CGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATAT 40032 | ||||||| |||||||||||||| || |||||||||||||||||||||||||||| || Sbjct 30335 CTATTATCGTGAACTGTTCAGGGAATCCGACATCAAGAGCGCGGTAGCCTTTTTTAGGAT 30394 Query 40033 TTCATTCTCCATTTCAATGCGTTGTA---GCTTTTTCCTGAGCTCACGGATTTCAATTTG 40089 || ||||||||||||| |||||||| ||||| || | || | || |||| | || Sbjct 30395 TTAATTCTCCATTTCAGGGCGTTGTATTCGCTTT---CTCATTTCCCTGAGTTCAGTCTG 30451 Query 40090 TTCCGGGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGC--AGTTGT 40147 || || || | || | || |||| ||||| ||||| || || | | Sbjct 30452 CTCAGGCGTCAGAGGCACCCCCGGGGGCATTTTTCCCTGGCGCTC--CATGCTAAACGAT 30509 Query 40148 TTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCC-AC 40206 || ||||| | | || | | | |||| || | ||| || || || || | |||| Sbjct 30510 TTTACCCAGCGGTTAATGGCGTAGAGGCTGACGTTCATCGCCTTAGCCGC-TTTGCCGTG 30568 Query 40207 CGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATT 40266 ||||| ||||| || | ||||||| || | |||| |||||| || || |||| Sbjct 30569 AGTGTAGTTCTGATCCAGGACCAGTTTTGCCGCTTCGACTTTAAATTCAGCAGTAAA--- 30625 Query 40267 TCtttttttCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGT 40326 | ||| ||||||| ||||||| | ||||||||||||||| ||| |||||| Sbjct 30626 TGCTTTGCTCATTGGTTCACCTGTAAAATGTAGAGGTGAGCATATCATTTCTACTCAGGT 30685 Query 40327 GGCCAAATTCAGTGTGCCACTTCAAGGGGTGTAAA 40361 ||||||||||||||||| ||| || || | |||| Sbjct 30686 GGCCAAATTCAGTGTGCAACTACATGGTGATTAAA 30720 Score = 197 bits (218), Expect = 4e-46 Identities = 507/759 (67%), Gaps = 16/759 (2%) Strand=Plus/Minus Query 39600 TCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGG 39659 ||||||||||| ||||| | ||| ||| || | |||||| | | || | ||| || Sbjct 97903 TCACCGCACCAGACCTGGTCTGGTGAGGTGACCGTGAACTGGCGGTTGAGATGGTTGGGT 97844 Query 39660 ATAGCAACATGTTCATGACCACCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACC 39719 | |||||||||| | || || ||||| || ||| | | | ||| || ||| | Sbjct 97843 CTCTCAACATGTTCGTTGCCGCCGCGTTTGTATTTGTGCGCCAGTACCTGGCAACTGGCG 97784 Query 39720 AGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCCCATCTGGTAGCCTC--TCC 39777 | ||||||||||||| || | || || |||||||| ||||| | || ||| Sbjct 97783 ATGTCCAGCTCTTTCATCGGCTTACCGGCCAGCCAGCGGCCCATTTTTACACCAGAGTCC 97724 Query 39778 GGGTTGCC-ATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGGCTGATG--CCATGTA 39834 | || | || | |||||||||| || |||| || ||| |||| | ||| | Sbjct 97723 ATGGTGACGATGGAAGCGATGCTTCGGGCATCGGCAGAGCCGCCGCTGGCGTTCCAGGC- 97665 Query 39835 GCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACGGTTTT 39894 | | | ||||| |||||| | | || ||||| || | | || || Sbjct 97664 -CACCATAACCTGGCTGCGTTTAGCCACGCGCTCACCGTCGGGCTCATT-GGCCGAAGCC 97607 Query 39895 T-CCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGTGTGACCATAGGA 39953 | ||||| |||||||||||||||||||| | || ||||| | | | | ||| Sbjct 97606 TGCCAGTGCCTGTAGCTGCTGCGATGAACTTCAAAAGTCTGGCACAACGCGGAAACCGGA 97547 Query 39954 TAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCG 40013 || ||||||| || | ||| || || |||| ||| || ||||| ||||| ||||| | Sbjct 97546 TACCGCGCTCTCAGCCTGTCGACTACCGTGAACCGTTGAGTGAGTCCGACATTAAGAGAG 97487 Query 40014 CGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCT 40073 | ||||||||||||| ||||||||||||||||||| ||||| | |||||| | | | Sbjct 97486 CCGTAGCCTTTTTTAGGATTTCATTCTCCATTTCAAGACGTTGGA-TTTTTTCTTCATTT 97428 Query 40074 CACGGATTTCAATTTGTTCCGGGGTAATGGGGGAG-GCTTTTGGTGTTTTGCCCTGACGC 40132 |||| | || | || || || || | | || || | || ||||| ||||| ||| Sbjct 97427 CACGCAAATCGAGCTGCTCTGGCGTCA-GAGGAAGTCCGGCAGGCGTTTTACCCTGGCGC 97369 Query 40133 TCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTG 40192 || ||| | || ||||| | || || | ||| ||| |||| | || | Sbjct 97368 TCGAGTTTCAGCTTATTAACCCAGCGGGTAATAGCTGAATGGCTGACATTAACCGCCTCA 97309 Query 40193 GCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAAC 40252 ||||| | | | || || ||||| |||||||| | || | |||| | ||||| Sbjct 97308 GCGGCCTTTACGTAGGTATAGCCGTGGTCGACAACCAGCTTTGCTGCTTCGAGCTTAAAT 97249 Query 40253 TCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTT-CTGAGGTGAGCATAT 40311 ||||| | |||| ||| |||| || ||||||| |||| |||||||||||||| Sbjct 97248 TCTGCCGTGAAAT---GTTTAGCCATTTGATCACCTGTCGTGTTGTTGAGGTGAGCATAT 97192 Query 40312 CACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCA 40350 |||||| | ||||||||||| || |||||||||| || Sbjct 97191 CACCTCCGATCAGGTGGCCAGTATCCGTGTGCCACTACA 97153 Score = 194 bits (214), Expect = 4e-45 Identities = 228/310 (74%), Gaps = 19/310 (6%) Strand=Plus/Minus Query 40041 CCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAA 40100 |||||||||| |||| || | |||| | | |||||| |||||||||| ||||| || Sbjct 27172 CCATTTCAATAAGTTGAAGTTATTTCTTTAACTCACGAATTTCAATTTACTCCGGCGTTG 27113 Query 40101 TGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTG 40160 | || ||||||| || |||| |||||| | ||||||||| || | | Sbjct 27112 TTGGCGAGGCTTGGGGCATTTTTCCCTGATGTTCATCACGC------------CAGCGAG 27065 Query 40161 TCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGT 40220 |||| || ||||| || |||| ||| |||| | || | || || | ||||| | ||||| Sbjct 27064 TCATGGTAGAAAGCCCTACATACATCGCTTAGCCG-CTTCAGCAATGGTGTAATGCTGGT 27006 Query 40221 CAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATTTCtttttttCATTG 40280 | ||||| ||| | || ||||||||||| || ||||| ||||||||| || ||| Sbjct 27005 CGACAACAAGTGGGGCTGATTCGCGTTTGAAATCTGCACTAAAATTTTTT------ATTA 26952 Query 40281 GAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTG 40340 | |||||||| |||| ||||| ||||||||| | ||||||||||||||||||||| | Sbjct 26951 GGGCACCTGTTATGTTATGAGGCAAGCATATCAGATTTGTTCAGGTGGCCAAATTCAGAG 26892 Query 40341 TGCCACTTCA 40350 |||||| || Sbjct 26891 CGCCACTACA 26882 >seq411 Length=157309 Score = 87.8 bits (96), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 31015 GCAAAAAAGCGGGTTTTCACCCGTCAGAATCTGGCGGGGATCCGTCAGTAAAATCAAAAC 31074 |||||| || ||||||||| ||||||||||| |||||||||||||||| |||| || Sbjct 157066 GCAAAACAGGCTATTTTCACCCCCCAGAATCTGGCAGGGATCCGTCAGTAAATTCAACAC 157125 Query 31075 ATGATCCGTCAGATAA---AAAACCTTCTCGTCCGGACGCTTCGCAACCGGACACGCAG 31130 | ||||| ||| || |||||| || ||| || ||| |||||| ||| ||||| Sbjct 157126 AAGATCCATCATTAAAATCAAAACCCACTTGTCAGGTTGCTGAGCAACCCGACCCGCAG 157184 >seq3091 Length=6183 Score = 80.6 bits (88), Expect = 7e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 30642 ATGAGCACTAAATTAACCGGCTATGTATGGGATGGTTGCGCAGCGTCAGGCATGAAATTA 30701 |||||| ||| ||| ||| ||| || |||||||| |||||| ||| |||||||| | Sbjct 312 ATGAGCGTTAAGTTATCCGCCTACGTCTGGGATGGCTGCGCACTGTCCGGCATGAAGCTG 371 Query 30702 TCCAGCGTGGCAATTATGGCCCGCCTGGCTGATTTCAGTAATGACGAAGGTGTGTGCTGG 30761 || || | || ||||||||||||||||| | | | ||| || || ||||||||| Sbjct 372 TCGGAAGTAGTCATCATGGCCCGCCTGGCTGACTGGTGCAGTGATGATGGGGTGTGCTGG 431 Query 30762 CC 30763 || Sbjct 432 CC 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132588538242622