Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq508 120 4e-21 seq122 111 2e-18 seq38 111 2e-18 seq93 107 2e-17 seq138 102 1e-15 >seq508 Length=70226 Score = 120 bits (132), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| || ||| ||| | || || || ||||| |||||||| | | | ||| ||| Sbjct 50400 GCCAAATCACCGGGCAGAAGGAGACGGACAGCGGTTTGGATCTCCGGAGAGGTGATGGTG 50459 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 | |||||| || || || ||||||| |||||||| | |||| | | | ||||||| Sbjct 50460 ACCCTCTTGTTGGAATGGGCGAGACGGCTGGCCTCGGCGGCGATCCTCTTCAACATGTCG 50519 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || || |||||| ||| ||||| | ||| ||||||| || |||||||||||| Sbjct 50520 TTCACGAATGAGTTCGTGATGGACATGGCTTTGCTGGAGATACCACTTTCGGGGTGCACC 50579 Query 1254528 TGCTTGAGCACCTTGTAGATGAAC 1254551 ||||| || ||| |||||||| || Sbjct 50580 TGCTTCAGGACCGTGTAGATGTAC 50603 >seq122 Length=4874392 Score = 111 bits (122), Expect = 2e-18 Identities = 292/433 (67%), Gaps = 16/433 (4%) Strand=Plus/Minus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGAT-GGCCAGCGGCAGTGCCGACGCCATCTCGCGGTG 1726791 ||||||||||||||||||||||| | || ||| | || ||||| ||||| |||||||| Sbjct 2176509 CCGTCGGTGCCGTTCTTGAAGCCAACCGGGCAGGAG-AGCGCCGAGGCCATTTCGCGGTG 2176451 Query 1726792 CACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA 1726851 | |||||| ||||| ||||||||||| | || ||||| | |||||| || | ||| Sbjct 2176450 GATCTGGCTTTCGGTGGTGCGCGCGCCGATAGCCCCCCAGCTGATCAGGTCGGCAATATA 2176391 Query 1726852 AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAG 1726911 || | | || | ||| || || || ||| || | ||| | || Sbjct 2176390 CTGGCCGATCACCATATCGAGGAATTCCGTTGCGGTCGGC--ATGCCCAGCG-CATTGAT 2176334 Query 1726912 ATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAG 1726971 ||| ||| ||| |||| | ||| |||||||| | | ||| | ||||| || Sbjct 2176333 ATCCAGCAGCAGCTTACGCGCCACCGCCAGGCCGTGGTTGATTCGGAAGCTACCGTCAAG 2176274 Query 1726972 GTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGC 1727031 ||||| ||| | |||||| ||||| || || || ||||| || || | |||||| Sbjct 2176273 ATCGGGATCGGAGATCAGGCCTTTCCAGCCCACCACGGTACGCGGTTTCTCAAAATAGGC 2176214 Query 1727032 GCGCATGACCA-CGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCG--CAGGCG 1727088 |||||| || | | ||| ||||| || | ||||| || ||||| ||||| Sbjct 2176213 GCGCATAACAATCTCAAGGCGCG--AGTGA-TGCTTCTCGCGCA---GCGCGTTGAGGCG 2176160 Query 1727089 TCGGCCATAGTCGA-CGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAACCA 1727147 | | |||| || | || || || |||||||||| ||| || || |||| | |||| Sbjct 2176159 CCCGGCATACTCCAGCGCCGCACG-CGGGTCGTGCAGCGAGCAGGGGCCAATCACCACCA 2176101 Query 1727148 GCAGCCGCCGGTC 1727160 |||| ||| |||| Sbjct 2176100 GCAGGCGCGGGTC 2176088 >seq38 Length=2191528 Score = 111 bits (122), Expect = 2e-18 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || || || || |||||| ||| |||| | || || ||| | Sbjct 840170 AGAAGCGCACTGATGATATTTCAAGTTGGGACGCGGACTTTTTGAAGGTAGACCAGGGTA 840111 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| ||||| | || | || ||||||||||| ||||||||| | || | ||| | Sbjct 840110 CCCTATTTGAACTTATTTTGGCTGCCAACTACCTGGACATCAAGGGTTTGTTGGATGTGA 840051 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| |||| |||||||||||||| || || | || || |||||||| ||||||| Sbjct 840050 CCTGCAAAACTGTCGCCAACATGATCAAAGGTAAAACCCCTGAAGAGATCCGGAAGACCT 839991 Query 1592286 TTAACATCAAG 1592296 | || |||||| Sbjct 839990 TCAATATCAAG 839980 >seq93 Length=974399 Score = 107 bits (118), Expect = 2e-17 Identities = 149/204 (73%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 869195 ATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 869254 |||| || ||||| |||| || || ||||| || || | |||||| ||||| || ||| Sbjct 914641 ATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCTTAAGCCAGAAAATG 914700 Query 869255 GC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 || ||| || || || ||||| ||||| ||||| || || |||||| | || | ||||| Sbjct 914701 GCAGCA-AAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGGCAATTACTCGCTC 914759 Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCT 869373 ||||| ||| | || | || | ||||||||||| ||||| |||||||| ||| | Sbjct 914760 AGCAAACGTGGC-AGAC--TCATGAGCAATCCACTTCATGGCCCAATCGGCCTTCTTCTT 914816 Query 869374 CACCGACGGCACCGTGTCGATGGC 869397 ||| | || | || || ||||| Sbjct 914817 CACACATGGGAGTGTTTCAATGGC 914840 >seq138 Length=785392 Score = 102 bits (112), Expect = 1e-15 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||| || || || || | |||||| || || | | || || ||| |||| Sbjct 564158 AAGCGCACGGATGATATTTCAACTTGGGACGCCGACTTCTTGAAGGTAGACCAGGGCACC 564217 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 | || || | || | || ||||||||||| ||||||||| | |||| || | Sbjct 564218 TTGTTCGAACTTATTTTGGCTGCCAACTACCTGGACATCAAGGGTTTGCTGGACGTGACC 564277 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| |||| ||||||||||| || ||||| | || || || ||||| |||||||| Sbjct 564278 TGCAAGACTGTCGCCAACATGATTAAAGGCAAAACCCCTGAAGAAATCCGGAAGACCTTC 564337 Query 1592288 AACATCAAG 1592296 ||||||||| Sbjct 564338 AACATCAAG 564346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106625228890371