Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq43 131 2e-25 seq275 111 1e-19 seq45 98.7 9e-16 seq3962 93.3 4e-14 >seq43 Length=2082672 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||| || ||||| ||| || | Sbjct 901074 ATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTGGAAGTTGAACCCTCT 901133 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | ||||| || ||||||||||||||||| || || || ||||| Sbjct 901134 GATTCTATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 901193 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || || ||||| || ||| | | | |||| || || || Sbjct 901194 CAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCTGACTACAAT 901253 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || |||| | || ||||| |||||||| || Sbjct 901254 ATCCAGAAGGAGTCCACTTTACATCTTGTCTTGCGTTTGCGCGGTGG 901300 >seq275 Length=398669 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 ||| |||||||||||| | ||||| || || || |||||||| || | || || ||| | Sbjct 170532 TACAATGCAGATCTTTGTGAAAACCCTCACTGGGAAAACTATCACCTTAGAGGTTGAACC 170591 Query 24760 CACCGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCG 24818 | | ||| | | || |||| ||| | ||| || || ||||| |||||||| || || | Sbjct 170592 CTCAGACTCTATTGAGAACGTCAAAGCCAAA-ATTCAGGACAAGGAAGGAATCCCCCCAG 170650 Query 24819 ATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATT 24878 | || || ||| | || ||||| || || ||||| |||||| | | | ||||||| | Sbjct 170651 ACCAGCAGCGTCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACACTGTCAGACT 170710 Query 24879 ATAACATTCAAAA 24891 | ||||||||||| Sbjct 170711 ACAACATTCAAAA 170723 >seq45 Length=1811775 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || ||||| || | || | ||| || | || || || |||| ||| || |||||| Sbjct 849920 TACTCAACAATCTCAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTG 849979 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 ||| ||||| |||||||||||||| | ||| || |||||||||||||| ||||| | | Sbjct 849980 GATTTGCGGTTGCAAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGAC 850039 Query 139243 TCTATAATG 139251 || |||||| Sbjct 850040 TCAATAATG 850048 >seq3962 Length=6517 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| || || || || || || || || || | Sbjct 6099 ATGCAGATTTTTGTCAAGACTCTTACCGGCAAGACCATCACACTAGAGGTTGAGCCCTCT 6158 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || | || | || || || ||||| ||||| || || || || || || || Sbjct 6159 GACTCAATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 6218 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || ||||| |||||| ||| | | || || |||||| Sbjct 6219 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCTGACTATAAC 6278 Query 24884 ATTCA-AAAGG 24893 ||||| ||||| Sbjct 6279 ATTCAGAAAGG 6289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449862378641640